View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7580_low_21 (Length: 398)

Name: NF7580_low_21
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7580_low_21
NF7580_low_21
[»] chr5 (15 HSPs)
chr5 (235-383)||(40461898-40462046)
chr5 (2-103)||(40335896-40335997)
chr5 (1-98)||(40378362-40378459)
chr5 (240-316)||(40378759-40378835)
chr5 (156-215)||(40378614-40378673)
chr5 (273-371)||(21300940-21301035)
chr5 (7-69)||(12975326-12975387)
chr5 (17-72)||(36325986-36326041)
chr5 (5-47)||(30217082-30217124)
chr5 (10-56)||(34117569-34117615)
chr5 (249-367)||(137330-137445)
chr5 (16-96)||(2568608-2568689)
chr5 (16-96)||(14295457-14295537)
chr5 (5-62)||(18902781-18902837)
chr5 (16-72)||(18857439-18857494)
[»] chr8 (14 HSPs)
chr8 (249-371)||(18803026-18803145)
chr8 (268-371)||(15334106-15334206)
chr8 (268-371)||(15423202-15423302)
chr8 (268-371)||(15514475-15514575)
chr8 (249-367)||(14979725-14979843)
chr8 (5-60)||(9836882-9836937)
chr8 (5-60)||(11795079-11795134)
chr8 (5-54)||(8062322-8062371)
chr8 (5-72)||(6509331-6509397)
chr8 (5-60)||(28769367-28769422)
chr8 (28-78)||(4510998-4511047)
chr8 (11-95)||(8823427-8823511)
chr8 (5-77)||(8062495-8062566)
chr8 (10-54)||(41470344-41470388)
[»] chr4 (12 HSPs)
chr4 (273-372)||(4104363-4104459)
chr4 (5-97)||(18628571-18628663)
chr4 (5-98)||(30207599-30207691)
chr4 (16-71)||(2996550-2996604)
chr4 (5-98)||(49219088-49219181)
chr4 (4-96)||(17884019-17884111)
chr4 (5-54)||(56480341-56480390)
chr4 (8-60)||(1408327-1408379)
chr4 (16-72)||(10192260-10192315)
chr4 (53-96)||(34368828-34368872)
chr4 (268-371)||(35185485-35185586)
chr4 (5-96)||(52735073-52735164)
[»] chr6 (6 HSPs)
chr6 (252-367)||(12354278-12354393)
chr6 (5-96)||(33787773-33787864)
chr6 (273-335)||(2068866-2068928)
chr6 (249-371)||(14963655-14963772)
chr6 (5-93)||(24838771-24838859)
chr6 (5-96)||(24782010-24782101)
[»] chr7 (6 HSPs)
chr7 (273-335)||(20656579-20656641)
chr7 (268-371)||(48631239-48631339)
chr7 (5-96)||(30456478-30456569)
chr7 (5-60)||(6263391-6263446)
chr7 (10-60)||(18350740-18350790)
chr7 (26-72)||(44821935-44821980)
[»] scaffold0464 (1 HSPs)
scaffold0464 (268-371)||(3897-3997)
[»] chr1 (7 HSPs)
chr1 (249-364)||(1394086-1394199)
chr1 (26-98)||(49517019-49517091)
chr1 (5-96)||(7472263-7472353)
chr1 (17-72)||(25006074-25006128)
chr1 (4-94)||(44032026-44032116)
chr1 (16-72)||(4548697-4548752)
chr1 (24-72)||(6231863-6231911)
[»] chr2 (7 HSPs)
chr2 (8-98)||(10143121-10143211)
chr2 (17-60)||(18066115-18066158)
chr2 (17-60)||(18179280-18179323)
chr2 (5-60)||(35099627-35099682)
chr2 (5-47)||(11488277-11488319)
chr2 (26-60)||(15377752-15377786)
chr2 (17-61)||(16353847-16353891)
[»] chr3 (2 HSPs)
chr3 (5-55)||(24158531-24158581)
chr3 (16-60)||(52618990-52619034)


Alignment Details
Target: chr5 (Bit Score: 141; Significance: 8e-74; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 235 - 383
Target Start/End: Complemental strand, 40462046 - 40461898
Alignment:
Q  235 agggcttgatattgctaatcattatcttatttattttattcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtcta 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  40462046 agggcttgatattgctaatcattatcttatttattttattcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtcaa 40461947  T
Q  335 gatatttctttgaggatcattgaagcaacatcactagaaaatacttaga 383  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40461946 gatatttccttgaggatcattgaagcaacatcactagaaaatacttaga 40461898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 2 - 103
Target Start/End: Original strand, 40335896 - 40335997
Alignment:
Q  2 caaatttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttgttttagcttttgttaaagaaataaccta 101  Q
    ||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||||| ||    
T  40335896 caaatttccataagctttccaagatagcttatgaaagcagcttataacttatatgaaaaacaatttggcttattttatcttttgtcaaagaaataacata 40335995  T
Q  102 cg 103  Q
    ||    
T  40335996 cg 40335997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 40378362 - 40378459
Alignment:
Q  1 acaaatttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttgttttagcttttgttaaagaaataac 98  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||| |||| ||||||||| |||| |||||||| |||||    
T  40378362 acaaatttccataatctctccaagttagtttatgatagcagcttataacttatatgaaatacagtttggcttgttttatctttcgttaaagagataac 40378459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 40378759 - 40378835
Alignment:
Q  240 ttgatattgctaatcattatcttatttattttattcttctttccagccaacaaatttagaatcaacaagagatggta 316  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  40378759 ttgatattgctaatcattgtcttacttatttttttcttctttccagccaacaaatttagaatcagcaagagatggta 40378835  T

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Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 40378614 - 40378673
Alignment:
Q  156 ttggacatataatgtcgtattttgttcttttgtttgtatcttgttcctttgttcctcgac 215  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  40378614 ttggacatataatgttgtattttgttcttttgtttgtatcttgttactttgttcctcgac 40378673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 273 - 371
Target Start/End: Complemental strand, 21301035 - 21300940
Alignment:
Q  273 ttcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttctttgaggatcattgaagcaacatcactag 371  Q
    ||||||||| |||||||||||||||||   |||||||||||||| | ||||||| ||||||||  |   | | ||||||||||||||||||||||||||    
T  21301035 ttcttcttttcagccaacaaatttaga---aacaagagatggtagacattcatctgagtctagccaccgcctggaggatcattgaagcaacatcactag 21300940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 12975387 - 12975326
Alignment:
Q  7 ttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttga 69  Q
    |||||||| ||||||||| |||||||||||  ||||||||| |||||||| ||||||||||||    
T  12975387 ttccataagctctccaagatagcttatgaacacagcttatagcttatatg-aaaacaatttga 12975326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 36326041 - 36325986
Alignment:
Q  17 tctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgactt 72  Q
    |||||||| ||||||| ||||||| |||||||||||||  |||||||| |||||||    
T  36326041 tctccaagatagcttacgaaagcaacttataacttatacaaaaaacaaattgactt 36325986  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 30217124 - 30217082
Alignment:
Q  5 atttccataatctctccaagttagcttatgaaagcagcttata 47  Q
    |||||||||| ||||||| | ||||||||||||||||||||||    
T  30217124 atttccataagctctccaggatagcttatgaaagcagcttata 30217082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 34117569 - 34117615
Alignment:
Q  10 cataatctctccaagttagcttatgaaagcagcttataacttatatg 56  Q
    ||||| ||||||||| ||||||||||||||| |||||| ||||||||    
T  34117569 cataagctctccaagatagcttatgaaagcaacttatagcttatatg 34117615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 367
Target Start/End: Original strand, 137330 - 137445
Alignment:
Q  249 ctaatcattatcttatttatttta-ttcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttctttga 347  Q
    ||||||||| |||| ||||||||  |||||| ||| | |||||||||||||||   ||||||||||||| | |||||||  ||||||| ||   | | ||    
T  137330 ctaatcattgtcttctttatttttcttcttcattcaa-ccaacaaatttagaa---acaagagatggtagacattcatcgaagtctagctaccgcctcga 137425  T
Q  348 ggatcattgaagcaacatca 367  Q
    ||||||||||||||||||||    
T  137426 ggatcattgaagcaacatca 137445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 2568689 - 2568608
Alignment:
Q  16 ctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttagcttttgttaaagaaata 96  Q
    ||||||| | |||||||||||| || |||||| |||||| |||||||||||| || ||||||||  | |||||| |||||||    
T  2568689 ctctccatgatagcttatgaaaacaacttatagcttatacgaaaaacaatttaactttgttttatatcttgttatagaaata 2568608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 14295537 - 14295457
Alignment:
Q  16 ctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttagcttttgttaaagaaata 96  Q
    ||||||| | ||||||| |||| ||||||||| |||||||| |||||| |||||| || ||||| ||||||||| |||||||    
T  14295537 ctctccaggatagcttacgaaaacagcttatagcttatatg-aaaacagtttgactttattttatcttttgttatagaaata 14295457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 18902837 - 18902781
Alignment:
Q  5 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaac 62  Q
    |||||||||| ||| ||||  ||||||||||| |||||||||| ||||||||||||||    
T  18902837 atttccataagctccccaaaatagcttatgaa-gcagcttatagcttatatgaaaaac 18902781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 18857439 - 18857494
Alignment:
Q  16 ctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgactt 72  Q
    |||||||||  ||||||||||| |||||||||  ||||| |||||||||||||||||    
T  18857439 ctctccaagacagcttatgaaaacagcttatagattata-gaaaaacaatttgactt 18857494  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 249 - 371
Target Start/End: Original strand, 18803026 - 18803145
Alignment:
Q  249 ctaatcattatcttatttattttattcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttctttgag 348  Q
    |||||||||||||| ||| |||| ||||||||| |||||||||||||||||   |||||||||||||| | ||||||| ||||||||  |   | |||||    
T  18803026 ctaatcattatcttttttttttttttcttcttttcagccaacaaatttaga---aacaagagatggtagacattcatctgagtctagccaccgccttgag 18803122  T
Q  349 gatcattgaagcaacatcactag 371  Q
    |||||||||||||||||||||||    
T  18803123 gatcattgaagcaacatcactag 18803145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 371
Target Start/End: Original strand, 15334106 - 15334206
Alignment:
Q  268 ttttattcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttctttgaggatcattgaagcaacatca 367  Q
    |||| ||||||||| |||||||||||||||||   |||||||||||||| | ||||||| ||||||||  |   | ||||||||||||||||||||||||    
T  15334106 tttttttcttcttttcagccaacaaatttaga---aacaagagatggtagacattcatctgagtctagccaccgccttgaggatcattgaagcaacatca 15334202  T
Q  368 ctag 371  Q
    ||||    
T  15334203 ctag 15334206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 371
Target Start/End: Original strand, 15423202 - 15423302
Alignment:
Q  268 ttttattcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttctttgaggatcattgaagcaacatca 367  Q
    |||| ||||||||| |||||||||||||||||   |||||||||||||| | ||||||| ||||||||  |   | ||||||||||||||||||||||||    
T  15423202 tttttttcttcttttcagccaacaaatttaga---aacaagagatggtagacattcatctgagtctagccaccgccttgaggatcattgaagcaacatca 15423298  T
Q  368 ctag 371  Q
    ||||    
T  15423299 ctag 15423302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 371
Target Start/End: Original strand, 15514475 - 15514575
Alignment:
Q  268 ttttattcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttctttgaggatcattgaagcaacatca 367  Q
    |||| ||||||||| |||||||||||||||||   |||||||||||||| | ||||||| ||||||||  |   | ||||||||||||||||||||||||    
T  15514475 tttttttcttcttttcagccaacaaatttaga---aacaagagatggtagacattcatctgagtctagccaccgccttgaggatcattgaagcaacatca 15514571  T
Q  368 ctag 371  Q
    ||||    
T  15514572 ctag 15514575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 367
Target Start/End: Complemental strand, 14979843 - 14979725
Alignment:
Q  249 ctaatcattatcttatttattttattcttctt---tccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttcttt 345  Q
    ||||||||| |||||||| |||| ||||||||   | |||||||||||||||||   |||||||||||||| | ||||||| ||||||||  |   | ||    
T  14979843 ctaatcattgtcttattttttttcttcttcttcttttcagccaacaaatttaga---aacaagagatggtagacattcatctgagtctagccaccgcctt 14979747  T
Q  346 gaggatcattgaagcaacatca 367  Q
    ||||||||||||||||||||||    
T  14979746 gaggatcattgaagcaacatca 14979725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 9836882 - 9836937
Alignment:
Q  5 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaa 60  Q
    |||||||||| ||||||||| |||||||||||| ||| || |||||||||||||||    
T  9836882 atttccataagctctccaagatagcttatgaaaacaggttgtaacttatatgaaaa 9836937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 11795134 - 11795079
Alignment:
Q  5 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaa 60  Q
    |||||||||| |||||||   |||||||||||| ||||||||||||||||||||||    
T  11795134 atttccataagctctccataatagcttatgaaatcagcttataacttatatgaaaa 11795079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 8062371 - 8062322
Alignment:
Q  5 atttccataatctctccaagttagcttatgaaagcagcttataacttata 54  Q
    |||||||||||||||| ||| |||||||||||| ||||||||| ||||||    
T  8062371 atttccataatctctctaagatagcttatgaaaacagcttatagcttata 8062322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 6509331 - 6509397
Alignment:
Q  5 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgactt 72  Q
    ||||| |||| ||||||| | |||||||||||| ||||||||| ||||||| ||| ||||||||||||    
T  6509331 atttcaataagctctccaggatagcttatgaaaacagcttatagcttatat-aaatacaatttgactt 6509397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 28769367 - 28769422
Alignment:
Q  5 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaa 60  Q
    |||||||||| ||||||||  |||||||||||| ||||||||| |||||| |||||    
T  28769367 atttccataaactctccaaaatagcttatgaaaacagcttatagcttataagaaaa 28769422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 4511047 - 4510998
Alignment:
Q  28 gcttatgaaagcagcttataacttatatgaaaaacaatttgacttgtttta 78  Q
    |||||||||| ||||||||||||||||||| ||| |||||||||| |||||    
T  4511047 gcttatgaaaacagcttataacttatatgagaaa-aatttgacttttttta 4510998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 8823427 - 8823511
Alignment:
Q  11 ataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttagcttttgttaaagaaat 95  Q
    |||| ||| ||||| ||||||||||||| || |||||||||| || || |||||| |||| |||||||| ||||||||| ||||||    
T  8823427 ataagctcgccaagatagcttatgaaagtagattataacttacat-aagaacaatctgactttgttttatcttttgttatagaaat 8823511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 8062566 - 8062495
Alignment:
Q  5 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttgtttt 77  Q
    |||| ||||| ||||| ||| |||||||||| | || |||||| |||||||| ||||||||||||||| ||||    
T  8062566 attttcataaactctctaagatagcttatgagaacatcttatagcttatatg-aaaacaatttgacttttttt 8062495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 41470344 - 41470388
Alignment:
Q  10 cataatctctccaagttagcttatgaaagcagcttataacttata 54  Q
    |||||||||| |||| |||||||||||| ||||||| ||||||||    
T  41470344 cataatctcttcaagatagcttatgaaaacagcttacaacttata 41470388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 372
Target Start/End: Original strand, 4104363 - 4104459
Alignment:
Q  273 ttcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttctttgaggatcattgaagcaacatcactaga 372  Q
    ||||||||| |||||||||||||||||   |||||||||||||| | ||||||| ||||||||  |   | |||||||||||||||||||||||||||||    
T  4104363 ttcttcttttcagccaacaaatttaga---aacaagagatggtagacattcatctgagtctagccaccgccttgaggatcattgaagcaacatcactaga 4104459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 18628571 - 18628663
Alignment:
Q  5 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgact-tgttttagcttttgttaaagaaataa 97  Q
    |||||||||| ||||||||| || ||||||||| ||| ||||||||||||| ||||||| ||||||| | ||||  ||||||||||||||||||    
T  18628571 atttccataagctctccaagataacttatgaaaacagtttataacttatat-aaaaacagtttgactatatttttccttttgttaaagaaataa 18628663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 30207599 - 30207691
Alignment:
Q  5 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttgttttagcttttgttaaagaaataac 98  Q
    |||||||||||||||| ||| |||||||||||| || |||||| |||||||| |||||| ||||| || |||||  |||||||| |||| ||||    
T  30207599 atttccataatctctctaaggtagcttatgaaaacaacttatagcttatatg-aaaacagtttgatttattttattttttgttatagaactaac 30207691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 2996604 - 2996550
Alignment:
Q  16 ctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgact 71  Q
    ||||||||| |||||||||||| || |||||||||||||| |||||||||||||||    
T  2996604 ctctccaagatagcttatgaaaacaacttataacttatat-aaaaacaatttgact 2996550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 49219181 - 49219088
Alignment:
Q  5 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttagcttttgttaaagaaataac 98  Q
    |||||||||||||||  ||| ||| |||||||| || |||||| |||||||| |||| |||||||| || |||||  |||||||| |||||||||    
T  49219181 atttccataatctctttaagatagtttatgaaaacaacttatagcttatatg-aaaataatttgactttattttatattttgttatagaaataac 49219088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 17884111 - 17884019
Alignment:
Q  4 aatttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttagcttttgttaaagaaata 96  Q
    ||||| ||||| ||||||||  |||||||||||| || || ||||||||||  ||||||||||| || || ||||| ||||||||| |||||||    
T  17884111 aattttcataagctctccaatatagcttatgaaaacaactgataacttata-caaaaacaatttaactttattttatcttttgttatagaaata 17884019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 56480390 - 56480341
Alignment:
Q  5 atttccataatctctccaagttagcttatgaaagcagcttataacttata 54  Q
    |||| ||||| ||||||||| ||| |||||||| ||||||||||||||||    
T  56480390 attttcataagctctccaagatagtttatgaaaacagcttataacttata 56480341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 1408327 - 1408379
Alignment:
Q  8 tccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaa 60  Q
    ||||||| ||||| ||||||||||||||||||| ||||||  ||||| |||||    
T  1408327 tccataaactctcgaagttagcttatgaaagcaacttatagattatacgaaaa 1408379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 10192315 - 10192260
Alignment:
Q  16 ctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgactt 72  Q
    ||||||| | |||||| ||||| || ||||||||||||||| |||||||||||||||    
T  10192315 ctctccaggatagcttttgaaaacaacttataacttatatg-aaaacaatttgactt 10192260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 34368872 - 34368828
Alignment:
Q  53 tatgaaaaacaatttgac-ttgttttagcttttgttaaagaaata 96  Q
    |||||||||||||||||| |||||||| ||||||||| |||||||    
T  34368872 tatgaaaaacaatttgactttgttttatcttttgttatagaaata 34368828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 371
Target Start/End: Original strand, 35185485 - 35185586
Alignment:
Q  268 ttttattcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttctttgaggatcattgaagcaacatca 367  Q
    |||| ||||||||| ||||||||||||||||||  || | |||||||||   ||||||| |||||||| ||   | | || |||||| ||||||||||||    
T  35185485 ttttcttcttcttttcagccaacaaatttagaa--aaaaggagatggtaggcattcatcggagtctagctaccgcctcgatgatcatcgaagcaacatca 35185582  T
Q  368 ctag 371  Q
    ||||    
T  35185583 ctag 35185586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 52735164 - 52735073
Alignment:
Q  5 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttagcttttgttaaagaaata 96  Q
    |||||||||| |||| |||| ||||||| |||| || | ||||||||||||| |||  |||||||| || ||||| ||||||||| |||||||    
T  52735164 atttccataagctcttcaagatagcttacgaaaacaacatataacttatatg-aaagtaatttgactttattttatcttttgttacagaaata 52735073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 252 - 367
Target Start/End: Complemental strand, 12354393 - 12354278
Alignment:
Q  252 atcattatcttatttatttta-ttcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttctttgagga 350  Q
    |||||| |||||||||||||  ||||||||| |||||||||||||||||| ||||||||||| ||| | ||||||  |||| ||| ||   | |||||||    
T  12354393 atcattgtcttatttatttttcttcttcttttcagccaacaaatttagaaacaacaagagat-gtagacattcatatgagtttagctaccgcgttgagga 12354295  T
Q  351 tcattgaagcaacatca 367  Q
    |||||||||||||||||    
T  12354294 tcattgaagcaacatca 12354278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 33787773 - 33787864
Alignment:
Q  5 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttagcttttgttaaagaaata 96  Q
    |||||||||| ||||||||| || ||||||||| |||||||||||||||||| ||| ||||||||| ||||||||  |||||||| |||||||    
T  33787773 atttccataagctctccaagataacttatgaaaacagcttataacttatatg-aaatcaatttgactttgttttatattttgttatagaaata 33787864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 273 - 335
Target Start/End: Complemental strand, 2068928 - 2068866
Alignment:
Q  273 ttcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctag 335  Q
    ||||||||||||||||||||||||||||||| |||||||||||| | |||||||  |||||||    
T  2068928 ttcttctttccagccaacaaatttagaatcagcaagagatggtagacattcatcttagtctag 2068866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 371
Target Start/End: Original strand, 14963655 - 14963772
Alignment:
Q  249 ctaatcattatcttatttattttattcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttctttgag 348  Q
    |||||||||||||||||| ||||   ||||||| |||||||||||||||||   |||||||||||||| | ||||||| ||||||||  |   | ||||     
T  14963655 ctaatcattatcttattttttttc--cttcttttcagccaacaaatttaga---aacaagagatggtagacattcatctgagtctagccaccgccttgat 14963749  T
Q  349 gatcattgaagcaacatcactag 371  Q
    ||||| |||||||||||||||||    
T  14963750 gatcactgaagcaacatcactag 14963772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 24838771 - 24838859
Alignment:
Q  5 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttagcttttgttaaagaa 93  Q
    ||||| |||| ||||||| | |||||||||||| ||||||||| |||||||| |||| |||| | | |||||||| ||||||||||||||    
T  24838771 atttctataagctctccatgatagcttatgaaatcagcttatagcttatatg-aaaataattagtctttgttttatcttttgttaaagaa 24838859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 24782101 - 24782010
Alignment:
Q  5 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttg-ttttagcttttgttaaagaaata 96  Q
    |||| ||||| ||||| | | ||| |||| |||| ||||||||||||||||| |||||||||||| ||| ||||| ||||||||| |||||||    
T  24782101 attttcataagctctcaaggatagtttattaaagtagcttataacttatatg-aaaacaatttgatttgattttatcttttgttatagaaata 24782010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 273 - 335
Target Start/End: Original strand, 20656579 - 20656641
Alignment:
Q  273 ttcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctag 335  Q
    ||||||||||||||||||||||||||||||| |||||||||||| | |||||||  |||||||    
T  20656579 ttcttctttccagccaacaaatttagaatcagcaagagatggtagacattcatctaagtctag 20656641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 371
Target Start/End: Original strand, 48631239 - 48631339
Alignment:
Q  268 ttttattcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttctttgaggatcattgaagcaacatca 367  Q
    |||| ||||||||| ||||||||||| |||||   |||||||||||||| | ||||||| ||||||||  |   | || |||||||||||||||||||||    
T  48631239 ttttcttcttcttttcagccaacaaacttaga---aacaagagatggtagacattcatctgagtctagccaccgccttcaggatcattgaagcaacatca 48631335  T
Q  368 ctag 371  Q
    ||||    
T  48631336 ctag 48631339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 30456478 - 30456569
Alignment:
Q  5 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttagcttttgttaaagaaata 96  Q
    |||| ||||| ||||||||| ||| |||||||| |  ||||||||||||||| ||||||||||||| || ||||| ||||||||  |||||||    
T  30456478 attttcataagctctccaagatagtttatgaaaaccacttataacttatatg-aaaacaatttgactttattttatcttttgttttagaaata 30456569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 6263391 - 6263446
Alignment:
Q  5 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaa 60  Q
    |||||||||  |||||||   |||||||||||| ||||||||||||||||||||||    
T  6263391 atttccatatgctctccataatagcttatgaaatcagcttataacttatatgaaaa 6263446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 18350740 - 18350790
Alignment:
Q  10 cataatctctccaagttagcttatgaaagcagcttataacttatatgaaaa 60  Q
    ||||| ||||||| | |||||||||||| |||||||||||||||| |||||    
T  18350740 cataagctctccatgatagcttatgaaaacagcttataacttatacgaaaa 18350790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 44821980 - 44821935
Alignment:
Q  26 tagcttatgaaagcagcttataacttatatgaaaaacaatttgactt 72  Q
    |||||||||||| ||||||||||||||||  ||||||||||||||||    
T  44821980 tagcttatgaaaacagcttataacttata-caaaaacaatttgactt 44821935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 371
Target Start/End: Original strand, 3897 - 3997
Alignment:
Q  268 ttttattcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttctttgaggatcattgaagcaacatca 367  Q
    |||| ||||||||| |||||||||||||||||   |||||||||| ||| | ||||||| ||||||||  |   | ||||||| ||||||||||||||||    
T  3897 ttttcttcttcttttcagccaacaaatttaga---aacaagagatagtagacattcatctgagtctagccaccgccttgaggaccattgaagcaacatca 3993  T
Q  368 ctag 371  Q
    ||||    
T  3994 ctag 3997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 364
Target Start/End: Original strand, 1394086 - 1394199
Alignment:
Q  249 ctaatcattatcttatttatttta-ttcttctttccagccaacaaatttagaatcaacaagagatggtaaatattcatccgagtctagatatttctttga 347  Q
    ||||||||| |||||||||||||  ||||| ||| |||||||||||||||||   |||||||||||||| | ||||||  |||||||| ||   | | ||    
T  1394086 ctaatcattgtcttatttatttttcttcttgttttcagccaacaaatttaga---aacaagagatggtagacattcataggagtctagctaccgcctcga 1394182  T
Q  348 ggatcattgaagcaaca 364  Q
    |||||||| ||||||||    
T  1394183 ggatcattaaagcaaca 1394199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 49517091 - 49517019
Alignment:
Q  26 tagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttagcttttgttaaagaaataac 98  Q
    |||||||||||| ||||||||| |||| ||| ||||||||||||| || ||||| ||||||||| |||||||||    
T  49517091 tagcttatgaaaacagcttatagcttaaatg-aaaacaatttgactttattttatcttttgttatagaaataac 49517019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 7472353 - 7472263
Alignment:
Q  5 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgacttgttttagcttttgttaaagaaata 96  Q
    |||| ||||| ||||||||| ||||||||| || |||||||||  |||||  ||||||||||| |||| || || ||||||||| |||||||    
T  7472353 attttcataagctctccaagatagcttatggaaacagcttatagattatac-aaaaacaatttaacttattatatcttttgttatagaaata 7472263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 25006074 - 25006128
Alignment:
Q  17 tctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgactt 72  Q
    |||||||| |||||||||||| || |||||| |||||||| |||||||||||||||    
T  25006074 tctccaagatagcttatgaaaacaacttatagcttatatg-aaaacaatttgactt 25006128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 44032026 - 44032116
Alignment:
Q  4 aatttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgac-ttgttttagcttttgttaaagaaa 94  Q
    ||||||||||| |||| |||| || |||| ||||  || ||||| |||||||| ||||||||||||| || ||||||||||||||| |||||    
T  44032026 aatttccataagctcttcaagataacttaagaaaatagtttatagcttatatg-aaaacaatttgactttattttagcttttgttatagaaa 44032116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 4548752 - 4548697
Alignment:
Q  16 ctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgactt 72  Q
    ||||||||| |||||||||||| |||||||| |||| ||| ||||||| ||||||||    
T  4548752 ctctccaagatagcttatgaaaacagcttatgacttgtat-aaaaacagtttgactt 4548697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 6231863 - 6231911
Alignment:
Q  24 gttagcttatgaaagcagcttataacttatatgaaaaacaatttgactt 72  Q
    ||||||||| |||| |||||||||  |||||||||||||| ||||||||    
T  6231863 gttagcttacgaaaacagcttatagattatatgaaaaacagtttgactt 6231911  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 10143211 - 10143121
Alignment:
Q  8 tccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaaacaatttgactt-gttttagcttttgttaaagaaataac 98  Q
    ||||||| ||||||| | ||||||||||||  | |||||| ||||||| ||||||| ||||||||  ||||| ||||||||| |||||||||    
T  10143211 tccataaactctccatgatagcttatgaaaaaaacttatagcttatat-aaaaacagtttgacttaattttatcttttgttatagaaataac 10143121  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 18066158 - 18066115
Alignment:
Q  17 tctccaagttagcttatgaaagcagcttataacttatatgaaaa 60  Q
    |||||||| |||||||||||| ||||||||| ||||||||||||    
T  18066158 tctccaagatagcttatgaaaacagcttatagcttatatgaaaa 18066115  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 18179280 - 18179323
Alignment:
Q  17 tctccaagttagcttatgaaagcagcttataacttatatgaaaa 60  Q
    |||||| | |||||||||||||||||||||| ||||||||||||    
T  18179280 tctccaggatagcttatgaaagcagcttatagcttatatgaaaa 18179323  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 35099627 - 35099682
Alignment:
Q  5 atttccataatctctccaagttagcttatgaaagcagcttataacttatatgaaaa 60  Q
    |||||||||| ||||| | | ||||||||||||||||||||||||||  |||||||    
T  35099627 atttccataagctctcaaggatagcttatgaaagcagcttataactttaatgaaaa 35099682  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 11488319 - 11488277
Alignment:
Q  5 atttccataatctctccaagttagcttatgaaagcagcttata 47  Q
    |||| ||||||||||||| | ||||||||||||||||||||||    
T  11488319 atttgcataatctctccaggatagcttatgaaagcagcttata 11488277  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 15377786 - 15377752
Alignment:
Q  26 tagcttatgaaagcagcttataacttatatgaaaa 60  Q
    |||||||||||| ||||||||||||||||||||||    
T  15377786 tagcttatgaaaacagcttataacttatatgaaaa 15377752  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 16353891 - 16353847
Alignment:
Q  17 tctccaagttagcttatgaaagcagcttataacttatatgaaaaa 61  Q
    |||||||| |||||||| ||| ||||||||| |||||||||||||    
T  16353891 tctccaagatagcttataaaaacagcttatagcttatatgaaaaa 16353847  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 24158531 - 24158581
Alignment:
Q  5 atttccataatctctccaagttagcttatgaaagcagcttataacttatat 55  Q
    |||||||||| ||||||| | |||||||||||| |||||||| ||||||||    
T  24158531 atttccataagctctccaggatagcttatgaaaacagcttattacttatat 24158581  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 52619034 - 52618990
Alignment:
Q  16 ctctccaagttagcttatgaaagcagcttataacttatatgaaaa 60  Q
    |||| |||| |||||| ||||| ||||||||||||||||||||||    
T  52619034 ctcttcaagatagcttgtgaaaacagcttataacttatatgaaaa 52618990  T

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