View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_low_22 (Length: 394)
Name: NF7580_low_22
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 11164036 - 11163783
Alignment:
| Q |
19 |
taaagaatattaagaaccctaataaagcatatgaaaaaaccctaatagatataagaagagaagaagaagtttgtaacctggtgaatcgaggaggagctgt |
118 |
Q |
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| T |
11164036 |
taaagaatattaagaaccctaataaagcatatgaaaaaaccctaatagatataagaagagaagaagaagtttgtaacctggtgaatcgaggaggagctgt |
11163937 |
T |
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| Q |
119 |
tggagacaaaggggatcacatcccatggagattggttaagctgacaaatgtgtgtttgaagattttgaggtgaaaatgaaccattttgtagcaatgaaga |
218 |
Q |
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| T |
11163936 |
tggagacaaaggggatcacatcccatggagattggttaagctgacaaatgtgtgtttgaagattttgaggtgaaaatgaaccattttgtagcaatgaaga |
11163837 |
T |
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| Q |
219 |
tgaacaagtgaatagaagaggggaaagtttagcgtttttacgaatcctcatatg |
272 |
Q |
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| T |
11163836 |
tgaacaagtgaatagaagaggggaaagtttagcgtttttacgaatcctcatatg |
11163783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 21 - 269
Target Start/End: Complemental strand, 11157073 - 11156828
Alignment:
| Q |
21 |
aagaatattaagaaccctaataaagcatatgaaaaaaccctaatagatataagaagagaagaagaagtttgtaacctggtgaatcgaggaggagctgttg |
120 |
Q |
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| T |
11157073 |
aagagtattaagaaccctaataaagcatatgaaaaaaccctaataaatatgagaagagaagaagaagtttggaacctgg---attgaggaggagttgttg |
11156977 |
T |
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| Q |
121 |
gagacaaaggggatcacatcccatggagattggttaagctgacaaatgtgtgtttgaagattttgaggtgaaaatgaaccattttgtagcaatgaagatg |
220 |
Q |
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| T |
11156976 |
gaggcaaaggggatcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactggaaatgaaccattttgtaaaagtgaaggtg |
11156877 |
T |
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| Q |
221 |
aacaagtgaatagaagaggggaaagtttagcgtttttacgaatcctcat |
269 |
Q |
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| T |
11156876 |
aacaagtgaatagaagaggggaaagctttgtgtttttccgaatcctcat |
11156828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 11176746 - 11176672
Alignment:
| Q |
131 |
ggatcacatcccatggagattggttaagctgacaaatgtgtgtttgaagattttgaggtgaaaatgaaccatttt |
205 |
Q |
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| T |
11176746 |
ggataacatcccatggagattggttaaggtgacaaacgtgcgcttgaaaagtttcaattggaaatgaaccatttt |
11176672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 368
Target Start/End: Complemental strand, 11163725 - 11163686
Alignment:
| Q |
328 |
tatactgtgtcacatggttttcagttttcacagatctcact |
368 |
Q |
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| T |
11163725 |
tatactgtgtcacatggttttca-ctttcacagatctcact |
11163686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 271
Target Start/End: Original strand, 4703888 - 4704033
Alignment:
| Q |
126 |
aaaggggatcacatcccatggagattggttaagctgacaaatgtgtgtttgaagattttgaggtgaaaatgaaccattttgtagcaatgaagatgaacaa |
225 |
Q |
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| T |
4703888 |
aaaggggatggcatcccatggagattggttaagctgacaaacgtgcatttgaaaaggttcaaccggtaatgaatcattttgtagtagtgaagacgaacaa |
4703987 |
T |
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| Q |
226 |
gtgaatagaagaggggaaagtttagcgtttttacgaatcctcatat |
271 |
Q |
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| T |
4703988 |
gtgaatagaagaggggaaatcttcgcggcttttcgaatcctcatat |
4704033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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