View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7580_low_23 (Length: 377)
Name: NF7580_low_23
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 10994029 - 10993669
Alignment:
| Q |
1 |
cttcaagcatctccaaaactttatccattgaaggacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaatttcat |
100 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||| | |||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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|
| T |
10994029 |
cttcaagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcat |
10993930 |
T |
|
| Q |
101 |
ttcttcatctgtgtcattctcaattgttacttcacttccatcatgtaactgatcataaatccaaaaaggaaaataaatttggctagattgctcagctaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10993929 |
ttcttcatctgtgtcattctcaattgttacttcacttccatcatgtaactgatcataaatccaaaaaggaaaataaatttggctagattgctcagctaat |
10993830 |
T |
|
| Q |
201 |
gcattcaagttcttccgaagcaccatttgcagcgctcaaaaggcataatgaccagtgtttctggtggatagtcattagtagcatgattcattcagtgttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
10993829 |
gcattcaagttcttccgaagcaccatttgcagcgctcaaaaggcataatgaccagtgtttc---tggatagtcattagtagcatgattcattcagtgttt |
10993733 |
T |
|
| Q |
301 |
ctgtttctaatagatgagtacatttgttattcatttgcattggtactcaactgttttagtgatg |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10993732 |
ctgtttctaatagatgagtacatttgttattcatttgcattggtactcaactgttttagtgatg |
10993669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 11005345 - 11005130
Alignment:
| Q |
1 |
cttcaagcatctccaaaactttatccattgaaggacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaatttcat |
100 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11005345 |
cttcaagcatctcaatcactttatccattgaaggacgatcacctggttttgtctgtatacaccataaagccacaatcatcattttctttgccaatttcat |
11005246 |
T |
|
| Q |
101 |
ttcttcatctgtgtcattctcaattgttacttcacttccatcatgtaactgatcataaatccaaaaaggaaaataaatttggctagattgctcagctaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||| ||| |
|
|
| T |
11005245 |
ttcttcatctgtgtcattctcaattgttacttcacttccatcatgtaactgaccataaatccaaaaagggaaataaatttggcaagattgctcagccaat |
11005146 |
T |
|
| Q |
201 |
gcattcaagttcttcc |
216 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
11005145 |
ggattcaagttcttcc |
11005130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 10979111 - 10979322
Alignment:
| Q |
1 |
cttcaagcatctccaaaactttatccattgaaggacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaatttcat |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10979111 |
cttcaagcatctccaacactttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttat |
10979210 |
T |
|
| Q |
101 |
ttcttcatctgtgtcattctcaattgttacttcacttccatcatgtaactgatcataaatccaaaaaggaaaataaatttggctagattgctcagctaat |
200 |
Q |
| |
|
||| | |||||||||||| ||||| |||||||| |||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| | | |
|
|
| T |
10979211 |
ttcctgatctgtgtcattttcaatcgttacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccatt |
10979310 |
T |
|
| Q |
201 |
gcattcaagttc |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
10979311 |
gcattcaagttc |
10979322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 11010677 - 11010892
Alignment:
| Q |
1 |
cttcaagcatctccaaaactttatccattgaaggacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaatttcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||| || ||||||||||||||||||||||| | ||||| |
|
|
| T |
11010677 |
cttcaagcatctccaaaactttatccattgaaggacgatcatcaggttttgtctgtatacaccataacgccacaatcatcattttctttgctagcttcat |
11010776 |
T |
|
| Q |
101 |
ttcttcatctgtgtcattctcaattgttacttcacttccatcatgtaactgatcataaatccaaaaaggaaaataaatttggctagattgctcagctaat |
200 |
Q |
| |
|
||| | ||||||||| ||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
11010777 |
ttcctgatctgtgtcgttctcaattgttacttcacttccatcatgaaatttatcataaatccaaaaaggaaaataaatttggctggattgctcagccaat |
11010876 |
T |
|
| Q |
201 |
gcattcaagttcttcc |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11010877 |
gcattcaagttcttcc |
11010892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 10903217 - 10903431
Alignment:
| Q |
2 |
ttcaagcatctccaaaactttatccattgaaggacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaatttcatt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10903217 |
ttcaagcatctccaaaactttatccattgaaggacgatcctcgggttttgtttgtatacaccacaaagccacggtcatcattttctttgccaatttcatt |
10903316 |
T |
|
| Q |
102 |
tcttcatctgtgtcattctcaattgttacttcacttccatcatgtaactgatcataaatccaaaaaggaaaataaatttggctagattgctcagctaatg |
201 |
Q |
| |
|
|| | |||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||| || || |||| |
|
|
| T |
10903317 |
tcctgatctgtgtcattttcaatagttacttcccttccatcatgtaatcgatcataaatccaaaaagggaaataaatttggctagattgttcggccaatg |
10903416 |
T |
|
| Q |
202 |
cattcaagttcttcc |
216 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10903417 |
cattcaagttcttcc |
10903431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 10914376 - 10914591
Alignment:
| Q |
1 |
cttcaagcatctccaaaactttatccattgaaggacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaatttcat |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| | |||||||| || |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10914376 |
cttcaagcatctccaaaactttttccattgaaggacgatcctctggttttgtttgtatacaccacaaagctacaatcatcattttctttgccaatttcat |
10914475 |
T |
|
| Q |
101 |
ttcttcatctgtgtcattctcaattgttacttcacttccatcatgtaactgatcataaatccaaaaaggaaaataaatttggctagattgctcagctaat |
200 |
Q |
| |
|
||| | |||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||| |||||||||| |||||||| ||||| ||| |
|
|
| T |
10914476 |
ttcctgatctgtgtcattttcaatagttacttcccttccatcatgtaatcgatcataaatccaaaaagggaaataaatttcactagattgatcagccaat |
10914575 |
T |
|
| Q |
201 |
gcattcaagttcttcc |
216 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
10914576 |
gcattcaaattcttcc |
10914591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 11028932 - 11028715
Alignment:
| Q |
1 |
cttcaagcatctccaaaactttatccattgaaggacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaatttcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||||| || ||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
11028932 |
cttcaagcatctccaaaactttatccattgaaggacgatcctctggttttgtttgtatacaccacaaagccgcagtcatcattttctttgccaatttcat |
11028833 |
T |
|
| Q |
101 |
ttcttcatctgtgtcattctcaattg--ttacttcacttccatcatgtaactgatcataaatccaaaaaggaaaataaatttggctagattgctcagcta |
198 |
Q |
| |
|
||| | |||||||||||| ||||| | |||||| |||||||||||||| ||||||||||||| ||||| |||||||||||||||||||| ||||| | |
|
|
| T |
11028832 |
ttcctgatctgtgtcattttcaatagatatacttcccttccatcatgtaatcgatcataaatccagaaagggaaataaatttggctagattgttcagcca |
11028733 |
T |
|
| Q |
199 |
atgcattcaagttcttcc |
216 |
Q |
| |
|
|||||||| | ||||||| |
|
|
| T |
11028732 |
atgcattctaattcttcc |
11028715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 11032968 - 11033183
Alignment:
| Q |
1 |
cttcaagcatctccaaaactttatccattgaaggacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaatttcat |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||| | ||||| | ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11032968 |
cttcaagcatctccaacactttatccattggaggacgatcactaggtttcgcctgaatacaccacaaagccactatcatcattttctttgccaatttcat |
11033067 |
T |
|
| Q |
101 |
ttcttcatctgtgtcattctcaattgttacttcacttccatcatgtaactgatcataaatccaaaaaggaaaataaatttggctagattgctcagctaat |
200 |
Q |
| |
|
||| | || ||| |||||| |||||| | ||| |||||||| |||||||||||||||| ||||||||| |||||||| ||||| ||||| ||||| ||| |
|
|
| T |
11033068 |
ttcatgatttgtatcattcagaattgtcatttcccttccatcttgtaactgatcataaacccaaaaagggaaataaatctggcttgattgatcagccaat |
11033167 |
T |
|
| Q |
201 |
gcattcaagttcttcc |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11033168 |
gcattcaagttcttcc |
11033183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 11007515 - 11007730
Alignment:
| Q |
1 |
cttcaagcatctccaaaactttatccattgaaggacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaatttcat |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||| | ||||| | |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11007515 |
cttcaagcatctccaacactttatccattggaggacgatcactaggtttcgcttgaatacaccacaaagccactatcatcattttctttgccaatttcat |
11007614 |
T |
|
| Q |
101 |
ttcttcatctgtgtcattctcaattgttacttcacttccatcatgtaactgatcataaatccaaaaaggaaaataaatttggctagattgctcagctaat |
200 |
Q |
| |
|
|| | || ||| ||||||||||||||| ||| |||||||| |||||||||||||||| ||||||||| ||||||| ||||||||||| |||| ||| |
|
|
| T |
11007615 |
ctcatgatttgtagcattctcaattgttatttctcttccatcttgtaactgatcataaacccaaaaagggaaataaacctggctagattgaccagccaat |
11007714 |
T |
|
| Q |
201 |
gcattcaagttcttcc |
216 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
11007715 |
acatccaagttcttcc |
11007730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 4 - 125
Target Start/End: Original strand, 10901443 - 10901564
Alignment:
| Q |
4 |
caagcatctccaaaactttatccattgaaggacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaatttcatttc |
103 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||| | |||||||||||| ||||||| || |||||||||||| |||||||||||||||||||||| |
|
|
| T |
10901443 |
caagcatctcaatcactttatccattgaaggacgatcactaggttttgtctgagtacaccataatgccacaatcatcgttttctttgccaatttcatttc |
10901542 |
T |
|
| Q |
104 |
ttcatctgtgtcattctcaatt |
125 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
10901543 |
ttcatctgtgtcattctcaatt |
10901564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 10932756 - 10932870
Alignment:
| Q |
1 |
cttcaagcatctcc-aaaactttatccattgaaggacgatcgttgggttttgtctgaatacaccacaaagccacaatcatcattttctttgccaatttca |
99 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||| | ||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10932756 |
cttcaagcatctcctaaaactttttccattgaaggacgatcctcgggatttgtttgtatacaccacaaagccacgatcatcattttctttgccaatttca |
10932855 |
T |
|
| Q |
100 |
tttcttcatctgtgt |
114 |
Q |
| |
|
|||| | |||||||| |
|
|
| T |
10932856 |
tttcctgatctgtgt |
10932870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 10974142 - 10974248
Alignment:
| Q |
110 |
tgtgtcattctcaattgttacttcacttccatcatgtaactgatcataaatccaaaaaggaaaataaatttggctagattgctcagctaatgcattcaag |
209 |
Q |
| |
|
||||||||| ||||| | |||||| |||||||||||||| ||||||||||||| ||||| |||||||||||||||||||| || || ||||||||||| |
|
|
| T |
10974142 |
tgtgtcattttcaatagatacttcccttccatcatgtaatcgatcataaatccagaaagggaaataaatttggctagattgatcggccaatgcattcaaa |
10974241 |
T |
|
| Q |
210 |
ttcttcc |
216 |
Q |
| |
|
||||||| |
|
|
| T |
10974242 |
ttcttcc |
10974248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 331
Target Start/End: Original strand, 11031014 - 11031069
Alignment:
| Q |
272 |
tcattagtagcatgattcattcagtgtttctgtttctaatagatgagtacatttgttatt |
331 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
11031014 |
tcattagtagcatgatccactcagtgtttctgtttct----gataagtacatttgttatt |
11031069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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