View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_low_25 (Length: 349)
Name: NF7580_low_25
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 72 - 332
Target Start/End: Complemental strand, 40388436 - 40388174
Alignment:
| Q |
72 |
attgctttatgcttccagtgttgatttagttcttgctggtcacgttcatgcttatgaacattcagtgcgcctcttatagtttagcctttattttaatttc |
171 |
Q |
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| T |
40388436 |
attgctttatgctgctagtgttgatttagttcttgctggtcatgttcatgcttatgaacgttcgatacaccttttatagtttagcctttattttaatttc |
40388337 |
T |
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| Q |
172 |
taagcacgatttaatggaaatttaacggaagattggatccatgtggcatcgtccatataactactggtgatggtggaaaccaagaaggcttagctcata- |
270 |
Q |
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| T |
40388336 |
taagcacgatttaatggaaatttaatggaagattggatcctggtggcgccgtccagataactattggtgatggtggaaaccgagaaggcttagctcatag |
40388237 |
T |
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| Q |
271 |
-caagtaatatctgccggacacattataaaaaattgttatctgaattgcttactgtctgaaat |
332 |
Q |
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| T |
40388236 |
gtaaataatatctgccagacacattataaaaatgtgttatctgaattggttactgtctgaaat |
40388174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 9 - 194
Target Start/End: Complemental strand, 40335624 - 40335439
Alignment:
| Q |
9 |
gtggtataatagtaacaaggctcaccaaggtgcaatggatgatatgatggcagtcatggagccattgctttatgcttccagtgttgatttagttcttgct |
108 |
Q |
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| T |
40335624 |
gtggtataatagtaacaaggctcaccaaggtgcaggggatgatatgatgacagtcatggagccattgctgtatgctgccagtgttgatttagttcttgct |
40335525 |
T |
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| Q |
109 |
ggtcacgttcatgcttatgaacattcagtgcgcctcttatagtttagcctttattttaatttctaagcacgatttaatggaaattt |
194 |
Q |
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| T |
40335524 |
ggacatgttcatgcttatgaacgttcggtaggccttttatattttagcctttattttaatttctaagcacaatttaatggaaattt |
40335439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 31 - 211
Target Start/End: Complemental strand, 40378346 - 40378166
Alignment:
| Q |
31 |
caccaaggtgcaatggatgatatgatggcagtcatggagccattgctttatgcttccagtgttgatttagttcttgctggtcacgttcatgcttatgaac |
130 |
Q |
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| T |
40378346 |
caccaaagtgcaggggatgatatgatgacagtcatggagccattcctttatgctgccagtgttgatttagttcttgctggtcatgttcatgcttatgaac |
40378247 |
T |
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| Q |
131 |
attcagtgcgcctcttatagtttagcctttattttaatttctaagcacgatttaatggaaatttaacggaagattggatcc |
211 |
Q |
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| T |
40378246 |
attcgatacgccttttatagtttagcctttattttaatctctaagcccgatttaatggaaatttaatgaaagattggatcc |
40378166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 198 - 331
Target Start/End: Complemental strand, 40335392 - 40335257
Alignment:
| Q |
198 |
ggaagattggatccatgtggcatcgtccatataactactggtgatggtggaaaccaagaaggcttagctcata--caagtaatatctgccggacacatta |
295 |
Q |
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| T |
40335392 |
ggaagattggatccttgtggcgctgtccatataactattggtgatggtggaaaccgagaaggcttagctcataggcaagtaatatctgccagacacatta |
40335293 |
T |
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| Q |
296 |
taaaaaattgttatctgaattgcttactgtctgaaa |
331 |
Q |
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| T |
40335292 |
taaaaatttgttatctgaattggttactgtctgaaa |
40335257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 20218768 - 20218648
Alignment:
| Q |
10 |
tggtataatagtaacaaggctcaccaaggtgcaatggatgatatgatggcagtcatggagccattgctttatgcttccagtgttgatttagttcttgctg |
109 |
Q |
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| T |
20218768 |
tggtataatagtaacacagctcatcaaggtgaaggtggtgatatgatggaaaccatggagccattgctttatgctgctagcgtagatttagtttttgctg |
20218669 |
T |
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| Q |
110 |
gtcacgttcatgcttatgaac |
130 |
Q |
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| T |
20218668 |
gtcatgtccacgcatatgaac |
20218648 |
T |
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