View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_low_27 (Length: 335)
Name: NF7580_low_27
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 327
Target Start/End: Complemental strand, 41310628 - 41310317
Alignment:
| Q |
16 |
cattcagcactattcctttagtccttaaccactgaatgatgaatcatacattgtcattttttcacagtaactgaatttttagctaaaagataacacaaca |
115 |
Q |
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| T |
41310628 |
cattcagcactattcctttagtccttaaccactgaatgatgaatcatacattgtcattttctcacagtaactgaatttttagctaaaagataacacaaca |
41310529 |
T |
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| Q |
116 |
acttgttctttaacactgatttttgcagcatctacaaataatcaacaatattatcaatagattctaatcttgactgggtttgaggaaaagattgacttag |
215 |
Q |
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| T |
41310528 |
acttgttctttaacactgatttttgcagcatctacaaataatcaacaatattatgaatagattctaatcttgactgggtttgaggaaaagattgacttag |
41310429 |
T |
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| Q |
216 |
aacctggatcgattcacggtttaagttgctccggtgctgtcctgtgttaggtgctgcggtgtactgcagnnnnnnngctgccggtattctgtcagttttt |
315 |
Q |
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| T |
41310428 |
aacctggatcgattcacggtttaagttgctccggtgctgtcctgtgttgggtgctgcggtgtactgcagtttctttgctgccggtattctgtcagttttg |
41310329 |
T |
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| Q |
316 |
ctgttctctgct |
327 |
Q |
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| T |
41310328 |
ctgttctctgct |
41310317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 9561963 - 9562186
Alignment:
| Q |
16 |
cattcagcactattcctttagtccttaaccactgaatgatgaatcatacattgtcattttttcac----agtaactgaattttt-agctaaaagataaca |
110 |
Q |
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|||||| || ||||||||| |||||||||||||||||||||||||| ||||||||| ||| ||| ||||||||| ||||| |||| ||||||||| |
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| T |
9561963 |
cattcaacattattcctttggtccttaaccactgaatgatgaatcaaacattgtcactttctcatctaaagtaactgatttttttagctgaaagataacg |
9562062 |
T |
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| Q |
111 |
caacaacttgttctttaacactgatttttgcagcatctacaaataatcaacaatattat-ca-atagattctaatcttgactgggtttgaggaaaag--- |
205 |
Q |
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||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||| || ||| |||||||| |||||| |||||||||||||| |
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| T |
9562063 |
caataacttgttctttgacactgatttctgcagcatctacaaataatcaacaatattatgcatatatattctaattttgacttggtttgaggaaaagatt |
9562162 |
T |
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| Q |
206 |
attgacttagaacctggatcgatt |
229 |
Q |
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| T |
9562163 |
attgacttagaacctggatcgatt |
9562186 |
T |
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