View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_low_29 (Length: 330)
Name: NF7580_low_29
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 105 - 314
Target Start/End: Original strand, 51351131 - 51351340
Alignment:
| Q |
105 |
gattgaatcacaagtgatttaatgtgtgcttttactaatggaaactatgggaagtgattttgtgtctgttaaatgcgattttagcaattctgttgtctgc |
204 |
Q |
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| T |
51351131 |
gattgaatcacaagtgatttaatgtgtgcttttactaatggaaactatgggaagtgattttgtgtctgttaaatgcgattttagcaattctgttgtctgc |
51351230 |
T |
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| Q |
205 |
tgttgggttagtgttagattttttgaataggcaaatgttagtaattagtttgttaggaggaaggtgaaacattaacagaaaattgattgaacttggacgt |
304 |
Q |
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| T |
51351231 |
tgttgggttagtgttagattttttgaataggcaaatgttagtaattagtttgttaggaggaaggtgaaacgttaacagaaaattgattgaacttagacgt |
51351330 |
T |
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| Q |
305 |
agctcattct |
314 |
Q |
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| T |
51351331 |
agctcattct |
51351340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 51351071 - 51351123
Alignment:
| Q |
1 |
cttttgtgacatgcaaacaactctgttttccacagttgtggctgaagtttctc |
53 |
Q |
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| T |
51351071 |
cttttgtgacatgcaaacaactttgttttccacagttgtggctgaagtttctc |
51351123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 40020263 - 40020304
Alignment:
| Q |
66 |
caaatctcttttatggagttgatataaagagtagttatagat |
107 |
Q |
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| T |
40020263 |
caaatctcttttatggagttgatataaagagtagttatagat |
40020304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 263
Target Start/End: Original strand, 12038052 - 12038084
Alignment:
| Q |
231 |
ataggcaaatgttagtaattagtttgttaggag |
263 |
Q |
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| T |
12038052 |
ataggcaaatgttagtagttagtttgttaggag |
12038084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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