View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7580_low_31 (Length: 326)

Name: NF7580_low_31
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7580_low_31
NF7580_low_31
[»] chr1 (22 HSPs)
chr1 (24-321)||(39395711-39396005)
chr1 (55-131)||(10324937-10325013)
chr1 (54-131)||(1514353-1514430)
chr1 (71-144)||(43018461-43018534)
chr1 (75-131)||(3515828-3515884)
chr1 (79-142)||(33693020-33693083)
chr1 (52-114)||(3416107-3416169)
chr1 (74-146)||(6574176-6574248)
chr1 (54-94)||(27500332-27500372)
chr1 (75-131)||(32370050-32370106)
chr1 (88-131)||(37522942-37522985)
chr1 (55-94)||(52263646-52263685)
chr1 (59-137)||(4554912-4554989)
chr1 (77-131)||(28083909-28083963)
chr1 (54-111)||(213535-213592)
chr1 (55-131)||(48549013-48549087)
chr1 (71-144)||(52013493-52013566)
chr1 (55-131)||(6041485-6041560)
chr1 (71-111)||(17284126-17284166)
chr1 (71-131)||(20026179-20026239)
chr1 (71-163)||(28287351-28287442)
chr1 (75-131)||(44801595-44801651)
[»] chr6 (11 HSPs)
chr6 (71-146)||(30926793-30926868)
chr6 (55-131)||(1485145-1485221)
chr6 (55-146)||(31305846-31305937)
chr6 (54-131)||(852542-852619)
chr6 (71-131)||(34898705-34898766)
chr6 (54-137)||(9505774-9505857)
chr6 (74-131)||(2234525-2234582)
chr6 (71-128)||(10874507-10874564)
chr6 (74-111)||(34027435-34027472)
chr6 (71-128)||(34063325-34063382)
chr6 (72-144)||(25388075-25388146)
[»] chr8 (9 HSPs)
chr8 (71-137)||(4336640-4336706)
chr8 (54-133)||(16972062-16972141)
chr8 (75-114)||(5893234-5893273)
chr8 (55-133)||(30098918-30098994)
chr8 (70-120)||(3206078-3206128)
chr8 (55-133)||(13384653-13384731)
chr8 (55-133)||(26100145-26100223)
chr8 (54-114)||(32736489-32736549)
chr8 (55-111)||(34478193-34478249)
[»] chr2 (11 HSPs)
chr2 (55-149)||(44439246-44439340)
chr2 (54-130)||(13912798-13912874)
chr2 (54-137)||(33961979-33962062)
chr2 (71-146)||(3476444-3476519)
chr2 (55-146)||(33502847-33502938)
chr2 (70-131)||(10618955-10619016)
chr2 (74-131)||(42982554-42982611)
chr2 (81-143)||(7630191-7630253)
chr2 (71-146)||(7629866-7629939)
chr2 (71-147)||(36374311-36374386)
chr2 (55-111)||(42741007-42741063)
[»] chr7 (5 HSPs)
chr7 (70-131)||(30182310-30182371)
chr7 (54-131)||(38123664-38123741)
chr7 (54-131)||(40561756-40561833)
chr7 (74-131)||(27571872-27571929)
chr7 (74-106)||(22310477-22310509)
[»] chr4 (13 HSPs)
chr4 (54-131)||(33843987-33844064)
chr4 (55-122)||(4243406-4243473)
chr4 (55-142)||(10185193-10185280)
chr4 (75-144)||(2206362-2206431)
chr4 (54-146)||(32818368-32818459)
chr4 (70-122)||(33843702-33843754)
chr4 (71-131)||(37439155-37439215)
chr4 (99-131)||(48045744-48045776)
chr4 (86-137)||(8330120-8330171)
chr4 (55-114)||(47596300-47596359)
chr4 (54-111)||(41751270-41751327)
chr4 (55-131)||(9064241-9064317)
chr4 (76-128)||(20712664-20712715)
[»] chr3 (16 HSPs)
chr3 (71-133)||(30301013-30301076)
chr3 (54-131)||(27266792-27266869)
chr3 (54-131)||(35264409-35264486)
chr3 (55-131)||(3776532-3776608)
chr3 (80-144)||(44489235-44489299)
chr3 (89-128)||(829906-829945)
chr3 (54-133)||(36302191-36302270)
chr3 (55-116)||(46853533-46853594)
chr3 (71-126)||(44958621-44958676)
chr3 (84-146)||(20484020-20484082)
chr3 (71-121)||(23187865-23187915)
chr3 (58-127)||(35058375-35058445)
chr3 (71-108)||(37703132-37703169)
chr3 (72-131)||(3845129-3845189)
chr3 (71-131)||(25359589-25359649)
chr3 (61-129)||(38332559-38332627)
[»] chr5 (12 HSPs)
chr5 (54-146)||(33608499-33608591)
chr5 (96-145)||(42724403-42724452)
chr5 (75-159)||(3043040-3043124)
chr5 (58-137)||(37877062-37877141)
chr5 (54-146)||(10898718-10898808)
chr5 (75-144)||(11132804-11132873)
chr5 (70-131)||(24306110-24306171)
chr5 (70-131)||(24367145-24367206)
chr5 (54-131)||(36639947-36640024)
chr5 (54-146)||(10859836-10859928)
chr5 (25-89)||(14299850-14299913)
chr5 (25-81)||(29922956-29923011)
[»] scaffold0283 (1 HSPs)
scaffold0283 (96-145)||(18377-18426)
[»] scaffold0361 (1 HSPs)
scaffold0361 (74-106)||(14132-14164)


Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 24 - 321
Target Start/End: Complemental strand, 39396005 - 39395711
Alignment:
Q  24 aaagtaatttatatttggatatattcattccatgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttct 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  39396005 aaagtaatttatatttggatatattcattccatgtaaaaatgagtcgaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaattttt 39395906  T
Q  124 agcttcaaattagattcaattcttctctaaagcaaccaacattttgaatctcaggttaacttgatgaagaagataaatgattatacgaatgaatagcgcg 223  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39395905 agattcaaattagattcaattcttctctaaagcaaccaacattttgaatctcaggttaacttgatgaagaagatacatgattatacgaatgaatagcgcg 39395806  T
Q  224 gttgacaaagaagaaggaaataaaaccaacctggagagaagggaaacaagttcgttacggtgagcggagagggtaccttccactctgtctctgctact 321  Q
    |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39395805 gttgacaaa---gaaggaaataaaaccaacctggagagaagggaaacaagttcgttacggtgagcggagagggtaccttccactctgtctctgatact 39395711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 10324937 - 10325013
Alignment:
Q  55 atgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    |||||||| |||||  |||||||||||||||||||||||| |||| |||||| |||| || ||||||||| ||||||    
T  10324937 atgtaaaagtgagtataacaataaatttgagtgtaaaaatcaattatagaatcaaaagctacaatttctatcttcaa 10325013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 1514430 - 1514353
Alignment:
Q  54 catgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    |||||||||||||||  ||||||||||||| |||||||||| |||| || |||||||| || ||| | ||||||||||    
T  1514430 catgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaattatataataaaaagctacaaatcctagcttcaa 1514353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 43018534 - 43018461
Alignment:
Q  71 aacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattagattcaatt 144  Q
    |||||||||||||||| |||| || ||||||||||| ||||| ||||| |||||||||||  ||||| ||||||    
T  43018534 aacaataaatttgagtctaaacatcaattctagaattaaaaattccaaattctagcttcatgttagaatcaatt 43018461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 3515884 - 3515828
Alignment:
Q  75 ataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    |||| ||||||||||||||| ||||||||||| |||| || ||||||||||||||||    
T  3515884 ataattttgagtgtaaaaatcaattctagaatgaaaagctacaatttctagcttcaa 3515828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 142
Target Start/End: Complemental strand, 33693083 - 33693020
Alignment:
Q  79 atttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattagattcaa 142  Q
    |||||||||||||||| |||| |||||| |||| || |||||||||||||||| ||||| ||||    
T  33693083 atttgagtgtaaaaatcaattatagaatcaaaagctacaatttctagcttcaagttagaatcaa 33693020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 3416169 - 3416107
Alignment:
Q  52 tccatgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaact 114  Q
    ||||| ||||| ||||| |||| ||||||||| |||||||||| ||||||| |||||||||||    
T  3416169 tccatataaaattgagttaaactataaatttgtgtgtaaaaatcaattctaaaataaaaaact 3416107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 6574248 - 6574176
Alignment:
Q  74 aataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattagattcaattct 146  Q
    ||||||||||||| | ||||||||||||| ||| |||| ||| ||||| |||||| || ||||| ||||||||    
T  6574248 aataaatttgagtctgaaaattaattctacaatcaaaagctctaatttttagcttaaagttagaatcaattct 6574176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 27500372 - 27500332
Alignment:
Q  54 catgtaaaaatgagtcaaacaataaatttgagtgtaaaaat 94  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  27500372 catgtaaaaatgagttgaacaataaatttgagtgtaaaaat 27500332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 32370050 - 32370106
Alignment:
Q  75 ataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    ||||||||| ||||||||| |||||||||||||||||| | ||| ||||| ||||||    
T  32370050 ataaatttgtgtgtaaaaaataattctagaataaaaaattacaaattctaacttcaa 32370106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 37522942 - 37522985
Alignment:
Q  88 taaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    ||||||| |||||||| |||||||||||||| ||||||||||||    
T  37522942 taaaaatcaattctaggataaaaaactccaacttctagcttcaa 37522985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 94
Target Start/End: Original strand, 52263646 - 52263685
Alignment:
Q  55 atgtaaaaatgagtcaaacaataaatttgagtgtaaaaat 94  Q
    |||||||| ||||| |||||||||||||||||||||||||    
T  52263646 atgtaaaactgagttaaacaataaatttgagtgtaaaaat 52263685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 4554989 - 4554912
Alignment:
Q  59 aaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattaga 137  Q
    |||||||| ||||||||||||||||||  ||||||| || | || || ||||||||||||  |||| ||||||||||||    
T  4554989 aaaaatgaatcaaacaataaatttgagactaaaaatcaaattta-aagaaaaaactccaaagtctaacttcaaattaga 4554912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 28083909 - 28083963
Alignment:
Q  77 aaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    ||||||| ||||||||||||||| |||||| |||| || ||| ||||||||||||    
T  28083909 aaatttgtgtgtaaaaattaattatagaatcaaaagctacaaattctagcttcaa 28083963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 213535 - 213592
Alignment:
Q  54 catgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaa 111  Q
    ||||||||| |||||  ||||| |||||||||| ||||||| ||||||||||| ||||    
T  213535 catgtaaaagtgagttgaacaacaaatttgagtttaaaaatcaattctagaatcaaaa 213592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 48549013 - 48549087
Alignment:
Q  55 atgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    |||||||| |||||  ||||||||||  |||| ||||||| ||||||||||| | || || ||||||||||||||||    
T  48549013 atgtaaaagtgagttgaacaataaat--gagtttaaaaatcaattctagaatcagaagctacaatttctagcttcaa 48549087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 52013493 - 52013566
Alignment:
Q  71 aacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattagattcaatt 144  Q
    |||| ||||||||||||||||||| ||||||||||| | | ||  || ||| ||||||||| ||||| ||||||    
T  52013493 aacagtaaatttgagtgtaaaaatcaattctagaatcagagaccacagtttttagcttcaagttagaatcaatt 52013566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 6041560 - 6041485
Alignment:
Q  55 atgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    |||||||| ||||| |||||||||||| |||| ||||||  ||||||||||| |||  || ||| ||||||||||||    
T  6041560 atgtaaaagtgagttaaacaataaatt-gagtctaaaaaacaattctagaatcaaaggcttcaaattctagcttcaa 6041485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 17284166 - 17284126
Alignment:
Q  71 aacaataaatttgagtgtaaaaattaattctagaataaaaa 111  Q
    |||||||||||||||||||||||| |||| |||||| ||||    
T  17284166 aacaataaatttgagtgtaaaaatcaattttagaatcaaaa 17284126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 20026179 - 20026239
Alignment:
Q  71 aacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    ||||||||||||||||||  |||| ||||||||| | |||| ||  |||||||||||||||    
T  20026179 aacaataaatttgagtgttcaaatcaattctagagttaaaagcttgaatttctagcttcaa 20026239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 163
Target Start/End: Original strand, 28287351 - 28287442
Alignment:
Q  71 aacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattagattcaattcttctctaaagcaaccaac 163  Q
    |||||||||||||||||| ||||| ||||||| ||| |||| || ||| | || ||||| || ||||  ||||||| ||| ||||||||||||    
T  28287351 aacaataaatttgagtgttaaaatcaattctaaaatcaaaagctacaaatccttgcttc-aagtagaaccaattctactcaaaagcaaccaac 28287442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 44801651 - 44801595
Alignment:
Q  75 ataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    ||||||||| | ||||||||||||| |||||||||||||| ||| | ||| ||||||    
T  44801651 ataaatttgcgcgtaaaaattaattttagaataaaaaactacaaatcctaacttcaa 44801595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 30926793 - 30926868
Alignment:
Q  71 aacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattagattcaattct 146  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| || |||||    
T  30926793 aacaataaatttgagtgtaaaaatcaattctagaataaaaaactccaatttctagcttcaagttagaatccattct 30926868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 1485145 - 1485221
Alignment:
Q  55 atgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    |||||||| |||||  |||||||||||||||||| ||||| ||||||||||| |||| ||||||||||||| |||||    
T  1485145 atgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagctccaatttctagattcaa 1485221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 31305846 - 31305937
Alignment:
Q  55 atgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattagattcaattct 146  Q
    |||||||| |||||  | ||||||||||||||||| |||| ||||||||||| |||| ||||||||| ||||||||| ||||| ||| ||||    
T  31305846 atgtaaaagtgagttgatcaataaatttgagtgtataaatcaattctagaatcaaaagctccaatttttagcttcaagttagaatcagttct 31305937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 852619 - 852542
Alignment:
Q  54 catgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    ||||||||| ||||| |||||||| ||||| |||||||||| ||||||||||| | || || ||||||||||||||||    
T  852619 catgtaaaagtgagttaaacaatacatttgggtgtaaaaatcaattctagaatcagaacctacaatttctagcttcaa 852542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 34898766 - 34898705
Alignment:
Q  71 aacaataaatttgagtgtaaaaattaattctagaataa-aaaactccaatttctagcttcaa 131  Q
    ||||||||||| |||||| ||||| ||||||||||||| ||||||| |||||||||||||||    
T  34898766 aacaataaattcgagtgttaaaatcaattctagaataaaaaaactctaatttctagcttcaa 34898705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 9505857 - 9505774
Alignment:
Q  54 catgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattaga 137  Q
    ||||||||| || ||  |||||||||||||||| ||||||| |||  |||||| |||| |||||||||||| |||||| |||||    
T  9505857 catgtaaaagtgtgttgaacaataaatttgagtttaaaaatcaatcatagaatcaaaagctccaatttctatcttcaagttaga 9505774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 2234582 - 2234525
Alignment:
Q  74 aataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    ||||||||||||||| ||||| ||||||||||| |||| || || ||| |||||||||    
T  2234582 aataaatttgagtgttaaaatcaattctagaatcaaaagcttcagtttttagcttcaa 2234525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 10874564 - 10874507
Alignment:
Q  71 aacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagctt 128  Q
    |||| ||| ||||| ||||||||| ||||||||||| |||| ||| ||||||||||||    
T  10874564 aacactaagtttgaatgtaaaaatcaattctagaatcaaaagctctaatttctagctt 10874507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 34027435 - 34027472
Alignment:
Q  74 aataaatttgagtgtaaaaattaattctagaataaaaa 111  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  34027435 aataaatttgagtgtaaaaatcaattctagaatcaaaa 34027472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 34063382 - 34063325
Alignment:
Q  71 aacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagctt 128  Q
    |||||||| ||||| ||||||| ||||||||||||| | || || |||||||||||||    
T  34063382 aacaataagtttgattgtaaaagttaattctagaatgagaacctacaatttctagctt 34063325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 25388146 - 25388075
Alignment:
Q  72 acaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattagattcaatt 144  Q
    ||||||||||||||||| ||||| ||||||| ||| ||| ||| |||||||| | ||| ||||||| ||||||    
T  25388146 acaataaatttgagtgtcaaaatcaattctaaaatcaaagacttcaatttcttgtttc-aattagaatcaatt 25388075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 4336640 - 4336706
Alignment:
Q  71 aacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattaga 137  Q
    |||||||||||||||||||||||||||||||| |||||||| ||| | ||||||||||||| |||||    
T  4336640 aacaataaatttgagtgtaaaaattaattctaaaataaaaagctcaattttctagcttcaagttaga 4336706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 16972062 - 16972141
Alignment:
Q  54 catgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaat 133  Q
    ||||||||| ||| |  ||||||||||||| || ||||||| ||||||| ||| ||||||| ||| ||||||||||||||    
T  16972062 catgtaaaagtgatttgaacaataaatttgtgtttaaaaatcaattctaaaattaaaaactacaaattctagcttcaaat 16972141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 114
Target Start/End: Complemental strand, 5893273 - 5893234
Alignment:
Q  75 ataaatttgagtgtaaaaattaattctagaataaaaaact 114  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  5893273 ataaatttgtgtgtaataattaattctagaataaaaaact 5893234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 30098994 - 30098918
Alignment:
Q  55 atgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaat 133  Q
    |||||||| ||||| |||| ||||||||   |||||||||||||||||||||  ||| || ||| ||||||||||||||    
T  30098994 atgtaaaagtgagttaaactataaatttt--tgtaaaaattaattctagaatcgaaagctacaaattctagcttcaaat 30098918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 3206128 - 3206078
Alignment:
Q  70 aaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatt 120  Q
    ||||||||||||| |||||||| || |||| || |||||||||||||||||    
T  3206128 aaacaataaatttaagtgtaaagatcaattttataataaaaaactccaatt 3206078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 13384653 - 13384731
Alignment:
Q  55 atgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaat 133  Q
    |||||||| |||||  ||| ||||||||| |||| ||||| ||||||||||| |||| || ||| || |||||||||||    
T  13384653 atgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaattttagcttcaaat 13384731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 26100145 - 26100223
Alignment:
Q  55 atgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaat 133  Q
    |||||||| |||||  ||| ||||||||| |||||||||| |||| |||||| |||| || ||| | ||||||||||||    
T  26100145 atgtaaaagtgagttgaaccataaatttgtgtgtaaaaatcaattatagaatcaaaagctacaaatcctagcttcaaat 26100223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 32736549 - 32736489
Alignment:
Q  54 catgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaact 114  Q
    ||||||||| ||| |  ||| ||||||||| ||||||||||||||| || |||||||||||    
T  32736549 catgtaaaagtgaattgaactataaatttgtgtgtaaaaattaattttaaaataaaaaact 32736489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 34478193 - 34478249
Alignment:
Q  55 atgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaa 111  Q
    |||||||||| |||  |||||||||||||||| ||||||| ||||||| ||| ||||    
T  34478193 atgtaaaaataagttgaacaataaatttgagtataaaaatgaattctaaaatcaaaa 34478249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 44439340 - 44439246
Alignment:
Q  55 atgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattagattcaattcttct 149  Q
    |||||||| |||||  |||||||||||||||||| ||||| |||| |||||| |||| |||||| || ||||||||| ||||| |||||||||||    
T  44439340 atgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaaattttagcttcaagttagaatcaattcttct 44439246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 13912874 - 13912798
Alignment:
Q  54 catgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttca 130  Q
    |||||||||||||||  |||  |||||||| |||||||||||||||||||||||||||| | ||| |||||||||||    
T  13912874 catgtaaaaatgagttgaacggtaaatttgtgtgtaaaaattaattctagaataaaaaattacaaattctagcttca 13912798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 33961979 - 33962062
Alignment:
Q  54 catgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattaga 137  Q
    ||||||||||||| |  |||||||||||||||| ||||||| |||| |||||| ||||||||||||||| ||||| || |||||    
T  33961979 catgtaaaaatgacttgaacaataaatttgagtctaaaaatcaattatagaatcaaaaactccaatttcaagcttaaagttaga 33962062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 3476444 - 3476519
Alignment:
Q  71 aacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattagattcaattct 146  Q
    ||||||| |||||| ||||||||| ||||||||||| |||| ||| ||||| |||||| || ||||| ||||||||    
T  3476444 aacaatacatttgaatgtaaaaataaattctagaatcaaaagctctaatttttagctttaagttagaatcaattct 3476519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 33502847 - 33502938
Alignment:
Q  55 atgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattagattcaattct 146  Q
    ||||||||||||||  |||||||||||| ||||||| ||| |  |||||| | |||||||  || |||||||||||| ||||| ||||||||    
T  33502847 atgtaaaaatgagttgaacaataaattttagtgtaataatcacatctagactcaaaaacttgaaattctagcttcaagttagaatcaattct 33502938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 10618955 - 10619016
Alignment:
Q  70 aaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    |||||| |||||||||||| ||||| |||| |||||| |||| ||| |||||||||||||||    
T  10618955 aaacaacaaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaa 10619016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 42982611 - 42982554
Alignment:
Q  74 aataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    |||||||||| |||||||||| |||||| |||| |||| || ||||||||||||||||    
T  42982611 aataaatttgtgtgtaaaaatcaattctggaatcaaaagctacaatttctagcttcaa 42982554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 7630253 - 7630191
Alignment:
Q  81 ttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattagattcaat 143  Q
    ||||||| |||||| ||||||||||| |||| || |||| |||||||||| |||||| |||||    
T  7630253 ttgagtggaaaaatcaattctagaatcaaaagctacaatgtctagcttcacattagaatcaat 7630191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 7629939 - 7629866
Alignment:
Q  71 aacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattagattcaattct 146  Q
    |||||| |||||||||||||| || ||||||||| ||| || ||  ||| ||||||||||| ||||| ||||||||    
T  7629939 aacaatgaatttgagtgtaaatatcaattctagagtaagaagct--aatctctagcttcaagttagaatcaattct 7629866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 36374386 - 36374311
Alignment:
Q  71 aacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattagattcaattctt 147  Q
    |||||||||||||||| | | |||||||| || || |||||||||||| || ||||||| ||||||| | |||||||    
T  36374386 aacaataaatttgagtttgagaattaattataaaa-aaaaaactccaaattttagcttctaattagaataaattctt 36374311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 42741063 - 42741007
Alignment:
Q  55 atgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaa 111  Q
    |||||||| |||||   ||| ||||||||||||||||||| ||||||||||| ||||    
T  42741063 atgtaaaagtgagttggacagtaaatttgagtgtaaaaatcaattctagaatcaaaa 42741007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 30182310 - 30182371
Alignment:
Q  70 aaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    ||||||||||||||||||||||||||||||||||||| |||| || |||||| |||||||||    
T  30182310 aaacaataaatttgagtgtaaaaattaattctagaatcaaaagctacaatttttagcttcaa 30182371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 38123664 - 38123741
Alignment:
Q  54 catgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    ||||||||| |||||  | |||||||||||||||||||||| ||||||||||| | || || ||||||||||||||||    
T  38123664 catgtaaaagtgagttgaccaataaatttgagtgtaaaaatcaattctagaattagaagctacaatttctagcttcaa 38123741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 40561756 - 40561833
Alignment:
Q  54 catgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    ||||||||| |||||  ||||||| ||||||||||| |||||||||||||| | | ||||| ||||||||| ||||||    
T  40561756 catgtaaaagtgagttgaacaatatatttgagtgtataaattaattctagacttacaaactacaatttctaacttcaa 40561833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 27571929 - 27571872
Alignment:
Q  74 aataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    |||||| |||||||| ||||| ||||||||||| |||| |||||||||||| ||||||    
T  27571929 aataaacttgagtgttaaaatcaattctagaatcaaaagctccaatttctaacttcaa 27571872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 22310477 - 22310509
Alignment:
Q  74 aataaatttgagtgtaaaaattaattctagaat 106  Q
    ||||||||| |||||||||||||||||||||||    
T  22310477 aataaatttaagtgtaaaaattaattctagaat 22310509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 33844064 - 33843987
Alignment:
Q  54 catgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    ||||||||||| |||  |||||||||||||||||| ||||| |||| |||||| |||| |||||||||||||||||||    
T  33844064 catgtaaaaataagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaatttctagcttcaa 33843987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 4243473 - 4243406
Alignment:
Q  55 atgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttc 122  Q
    |||||||| |||||  |||||||||||||||||||||||| ||||||||||| |||| ||||||||||    
T  4243473 atgtaaaagtgagtagaacaataaatttgagtgtaaaaatcaattctagaatcaaaagctccaatttc 4243406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 55 - 142
Target Start/End: Complemental strand, 10185280 - 10185193
Alignment:
Q  55 atgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattagattcaa 142  Q
    |||||||| ||||| |||||||||||||||||||||| || |||| |||||| |||| || ||||||||| |||||| ||||| ||||    
T  10185280 atgtaaaagtgagttaaacaataaatttgagtgtaaagatcaattttagaatcaaaagcttcaatttctaccttcaagttagaatcaa 10185193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 2206362 - 2206431
Alignment:
Q  75 ataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattagattcaatt 144  Q
    ||||||||||||| |||||| ||| ||||||| |||| ||||||||| |||||||||  |||| ||||||    
T  2206362 ataaatttgagtgcaaaaatcaatcctagaatcaaaagctccaatttttagcttcaagctagaatcaatt 2206431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 32818368 - 32818459
Alignment:
Q  54 catgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattagattcaattct 146  Q
    ||||||||| | |||  ||| ||||||||| ||| |||||| ||||||||||| |||| || ||| ||||||||||||| |||| ||||||||    
T  32818368 catgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaa-tagaatcaattct 32818459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 33843754 - 33843702
Alignment:
Q  70 aaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttc 122  Q
    ||||||||||||||||||| ||||| |||| ||| ||||||| ||||||||||    
T  33843754 aaacaataaatttgagtgttaaaatcaattttaggataaaaagctccaatttc 33843702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 37439215 - 37439155
Alignment:
Q  71 aacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    ||||||||| |||||||||||||| |||| |||||| |||| ||  |||||||||||||||    
T  37439215 aacaataaaattgagtgtaaaaatcaattatagaattaaaagctataatttctagcttcaa 37439155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 48045744 - 48045776
Alignment:
Q  99 tctagaataaaaaactccaatttctagcttcaa 131  Q
    |||||||||||||||||||||||||||||||||    
T  48045744 tctagaataaaaaactccaatttctagcttcaa 48045776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 8330171 - 8330120
Alignment:
Q  86 tgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattaga 137  Q
    ||||||||| |||| |||||| |||| ||||||||||||||||||| |||||    
T  8330171 tgtaaaaatcaattatagaatcaaaagctccaatttctagcttcaagttaga 8330120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 47596300 - 47596359
Alignment:
Q  55 atgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaact 114  Q
    ||||||||||| |  ||||||||||||||||||||||||| |||| || ||| |||||||    
T  47596300 atgtaaaaatgggctaaacaataaatttgagtgtaaaaatcaattttataatcaaaaact 47596359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 41751270 - 41751327
Alignment:
Q  54 catgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaa 111  Q
    ||||||||| ||| | ||||||||||||| ||| ||||||| ||||||||||| ||||    
T  41751270 catgtaaaactgaattaaacaataaatttaagtttaaaaatcaattctagaatcaaaa 41751327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 9064317 - 9064241
Alignment:
Q  55 atgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    |||||||| |||||  |||  |||| |||||||| ||||| ||||||||||| ||||||| ||| |||||| |||||    
T  9064317 atgtaaaagtgagttgaaccgtaaacttgagtgtgaaaatcaattctagaatcaaaaactacaaattctagtttcaa 9064241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 20712715 - 20712664
Alignment:
Q  76 taaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagctt 128  Q
    |||| |||||||||||||| |||| |||||| |||| ||||||||||||||||    
T  20712715 taaaattgagtgtaaaaatcaattatagaat-aaaagctccaatttctagctt 20712664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 30301013 - 30301076
Alignment:
Q  71 aacaataaatttgagtgtaaaaattaattctagaat-aaaaaactccaatttctagcttcaaat 133  Q
    |||||||||||||||||| ||||  ||||||||||| |||||||||||||||||||||||||||    
T  30301013 aacaataaatttgagtgttaaaaccaattctagaattaaaaaactccaatttctagcttcaaat 30301076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 27266792 - 27266869
Alignment:
Q  54 catgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    ||||||||| | |||  ||||||||||||||||||||||||||||||| |||| |  | || ||||||||||||||||    
T  27266792 catgtaaaagttagttgaacaataaatttgagtgtaaaaattaattcttgaatcattagctacaatttctagcttcaa 27266869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 35264409 - 35264486
Alignment:
Q  54 catgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    ||||||||||||| |  |||||||||||| ||||| ||||| ||||||||||| |||| ||| ||||||||| |||||    
T  35264409 catgtaaaaatgacttgaacaataaatttaagtgttaaaatcaattctagaatcaaaagctctaatttctagtttcaa 35264486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 3776608 - 3776532
Alignment:
Q  55 atgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    |||||||| |||||  | ||| |||||||||||||||||||||||||||||| | || || |||||||||| |||||    
T  3776608 atgtaaaagtgagttcagcaacaaatttgagtgtaaaaattaattctagaatcagaagctacaatttctagattcaa 3776532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 44489299 - 44489235
Alignment:
Q  80 tttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattagattcaatt 144  Q
    ||||||||||||||| |||| |||||||||||||||||| ||||||  |||| ||||| ||||||    
T  44489299 tttgagtgtaaaaatcaattgtagaataaaaaactccaacttctagtatcaagttagaatcaatt 44489235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 829945 - 829906
Alignment:
Q  89 aaaaattaattctagaataaaaaactccaatttctagctt 128  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  829945 aaaaatcaattctagaataaaaaactccaatttctagctt 829906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 36302270 - 36302191
Alignment:
Q  54 catgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaat 133  Q
    ||||||||| |||||  |||||||||||| ||||  ||||| ||||||| ||| |||| ||||||| |||||||||||||    
T  36302270 catgtaaaagtgagttgaacaataaatttaagtgctaaaatcaattctaaaatcaaaatctccaatctctagcttcaaat 36302191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 46853533 - 46853594
Alignment:
Q  55 atgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactcc 116  Q
    |||||||| |||||  |||||||||||||||||| ||||| ||||||||||| |||| ||||    
T  46853533 atgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagctcc 46853594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 44958621 - 44958676
Alignment:
Q  71 aacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagc 126  Q
    ||||||||| |||||||| ||||| | ||||||||| |||| ||||||||||||||    
T  44958621 aacaataaagttgagtgttaaaatcatttctagaatcaaaagctccaatttctagc 44958676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 20484020 - 20484082
Alignment:
Q  84 agtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattagattcaattct 146  Q
    ||||||| ||| ||||| ||||| ||||| || || |||||||||||||||||| ||||||||    
T  20484020 agtgtaacaatcaattcaagaatgaaaaattctaaattctagcttcaaattagaatcaattct 20484082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 23187915 - 23187865
Alignment:
Q  71 aacaataaatttgagtgtaaaaattaattctagaataaaaaactccaattt 121  Q
    ||||| |||||||||||||||| | ||||||||||| |||| |||||||||    
T  23187915 aacaacaaatttgagtgtaaaattcaattctagaattaaaagctccaattt 23187865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 35058445 - 35058375
Alignment:
Q  58 taaaaatgagtcaaacaataa-atttgagtgtaaaaattaattctagaataaaaaactccaatttctagct 127  Q
    ||||| |||||  |||||||| |||||||||| ||||| ||||||||||| |||| ||| |||||||||||    
T  35058445 taaaagtgagttgaacaataatatttgagtgttaaaatcaattctagaatcaaaagctcgaatttctagct 35058375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 37703169 - 37703132
Alignment:
Q  71 aacaataaatttgagtgtaaaaattaattctagaataa 108  Q
    ||||||||||||||||||||||||||||| || |||||    
T  37703169 aacaataaatttgagtgtaaaaattaattttaaaataa 37703132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 3845129 - 3845189
Alignment:
Q  72 acaataaatttgagtgtaaaaatt-aattctagaataaaaaactccaatttctagcttcaa 131  Q
    ||||||||||| |||||||||| | ||||||||||| |||| ||||| ||||||| |||||    
T  3845129 acaataaattttagtgtaaaaaatcaattctagaatcaaaagctccagtttctagtttcaa 3845189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 25359589 - 25359649
Alignment:
Q  71 aacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    |||||||||| || |||| ||||| |||| |||||||||||||| ||| ||||| ||||||    
T  25359589 aacaataaatatgtgtgtgaaaatcaattatagaataaaaaactacaaattctaacttcaa 25359649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 38332559 - 38332627
Alignment:
Q  61 aaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttc 129  Q
    ||||||||  ||||||||||||||||||||| |  |||| |||||| | || ||||||||| |||||||    
T  38332559 aaatgagttgaacaataaatttgagtgtaaataccaattttagaatcagaagctccaatttgtagcttc 38332627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 33608591 - 33608499
Alignment:
Q  54 catgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattagattcaattct 146  Q
    ||||||||| |||||  ||| || ||||| | |||||||||  |||||||||| ||||||||||| |||||||||||| ||||| ||||||||    
T  33608591 catgtaaaagtgagttgaactatgaatttaactgtaaaaatccattctagaatgaaaaactccaacttctagcttcaagttagaatcaattct 33608499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 42724452 - 42724403
Alignment:
Q  96 aattctagaataaaaaactccaatttctagcttcaaattagattcaattc 145  Q
    ||||||||||||||||||| |||||||||||||||| ||||| |||||||    
T  42724452 aattctagaataaaaaacttcaatttctagcttcaagttagaatcaattc 42724403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 3043040 - 3043124
Alignment:
Q  75 ataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattagattcaattcttctctaaagcaac 159  Q
    |||| ||||| | ||||||| |||||||||||  ||||||||||||||||||||||  ||||| ||||||||  ||| |||||||    
T  3043040 ataactttgaatataaaaatcaattctagaattgaaaactccaatttctagcttcatgttagaatcaattctattcttaagcaac 3043124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 37877141 - 37877062
Alignment:
Q  58 taaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattaga 137  Q
    ||||| ||||| ||||||||||||||||  |||||||| ||||||| |  |||||||| || |||||||||||| |||||    
T  37877141 taaaagtgagttaaacaataaatttgaggctaaaaattcattctaggagcaaaaactctaaattctagcttcaagttaga 37877062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 10898808 - 10898718
Alignment:
Q  54 catgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattagattcaattct 146  Q
    ||||||||| |||||  ||||||||||||| |||||||||| |||  |||| | || |||||||||||||  |||||| ||||| ||||||||    
T  10898808 catgtaaaagtgagttgaacaataaatttgtgtgtaaaaatcaat--tagattcaataactccaatttcttacttcaagttagaatcaattct 10898718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 11132804 - 11132873
Alignment:
Q  75 ataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattagattcaatt 144  Q
    |||| |||||||||||| || ||||||| |||||||| || |||||| ||||||||| ||||| ||||||    
T  11132804 ataattttgagtgtaaatatcaattctacaataaaaagctacaatttgtagcttcaagttagaatcaatt 11132873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 24306110 - 24306171
Alignment:
Q  70 aaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    ||||||||||||||||||||||||| |||| |||||| ||||  | ||||||||| ||||||    
T  24306110 aaacaataaatttgagtgtaaaaatcaattatagaatcaaaagttacaatttctaacttcaa 24306171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 24367206 - 24367145
Alignment:
Q  70 aaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    ||||||||||||||||||||||||| |||| |||||| ||||  | ||||||||| ||||||    
T  24367206 aaacaataaatttgagtgtaaaaatcaattatagaatcaaaagttacaatttctaacttcaa 24367145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 36640024 - 36639947
Alignment:
Q  54 catgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaa 131  Q
    ||||||||| ||||   |||| ||||||||||||||||||  ||||||||||| | || || ||||||| ||||||||    
T  36640024 catgtaaaagtgaggtgaacattaaatttgagtgtaaaaaacaattctagaattagaagctacaatttccagcttcaa 36639947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 10859836 - 10859928
Alignment:
Q  54 catgtaaaaatgagtcaaacaataaatttgagtgtaaaaattaattctagaataaaaaactccaatttctagcttcaaattagattcaattct 146  Q
    ||||||| || | |||||||||||||||||||  ||||||| || | | ||   |||| |||||| |||||||||||| ||||| ||||||||    
T  10859836 catgtaagaaagggtcaaacaataaatttgaggttaaaaatcaaatgttgaggcaaaagctccaaattctagcttcaagttagaatcaattct 10859928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 14299913 - 14299850
Alignment:
Q  25 aagtaatttatatttggatatattcattccatgtaaaaatgagtcaaacaataaatttgagtgta 89  Q
    |||||||||||  ||||||| |||||||| ||||||||||||||  |||| ||| ||||||||||    
T  14299913 aagtaatttattattggatacattcattc-atgtaaaaatgagttgaacagtaagtttgagtgta 14299850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 29923011 - 29922956
Alignment:
Q  25 aagtaatttatatttggatatattcattccatgtaaaaatgagtcaaacaataaatt 81  Q
    ||||||||||| |||||||| ||||||| |||| |||||||||| ||| ||||||||    
T  29923011 aagtaatttatgtttggatacattcatt-catgcaaaaatgagttaaaaaataaatt 29922956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 18426 - 18377
Alignment:
Q  96 aattctagaataaaaaactccaatttctagcttcaaattagattcaattc 145  Q
    ||||||||||||||||||| |||||||||||||||| ||||| |||||||    
T  18426 aattctagaataaaaaacttcaatttctagcttcaagttagaatcaattc 18377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 14132 - 14164
Alignment:
Q  74 aataaatttgagtgtaaaaattaattctagaat 106  Q
    ||||||||||||||||||||| |||||||||||    
T  14132 aataaatttgagtgtaaaaatcaattctagaat 14164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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