View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_low_33 (Length: 297)
Name: NF7580_low_33
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 24332780 - 24332912
Alignment:
| Q |
1 |
cgtgagtatagcattatcagaataattgaataatgtactctttggcgaaagtgcacatctcgggtttgacagttacatttatcccatttccatcttcaaa |
100 |
Q |
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| T |
24332780 |
cgtgagtatagcattatcagaataattgaacaatgtactcttcggcgaaattgcacatctcgggtttgtcagttacatttatcccatttccatcttcaaa |
24332879 |
T |
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| Q |
101 |
ggaaacaatatggtttgccttctttgaataaaa |
133 |
Q |
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| T |
24332880 |
ggaaacaatatggtttgccttctttaaataaaa |
24332912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 39153350 - 39153218
Alignment:
| Q |
1 |
cgtgagtatagcattatcagaataattgaataatgtactctttggcgaaagtgcacatctcgggtttgacagttacatttatcccatttccatcttcaaa |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39153350 |
cgtgagtatagcattatcagaataattgaacaatgtactcttcggcgaaattgcacatctcgggtttgtcagttacatttatcccatttccatcttcaaa |
39153251 |
T |
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| Q |
101 |
ggaaacaatatggtttgccttctttgaataaaa |
133 |
Q |
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| T |
39153250 |
ggaaacaatatggtttgccttctttaaataaaa |
39153218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 39151928 - 39151847
Alignment:
| Q |
127 |
aataaaatatcatttcatcaatatggctaaagacgagtgcnnnnnnngagctcaaccacatgtaataaaattgagaagtact |
208 |
Q |
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| T |
39151928 |
aataaaatatcatttcatcaatatggctaaagacgagtgcaaaaaaagagctcaaccacatgtaataaaattgagaagtact |
39151847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 39151723 - 39151648
Alignment:
| Q |
203 |
agtactaacaataaaatatcatttcatcgtactgtttatccacaaaaattaaaatctt--tagtgttaattcatgg |
276 |
Q |
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|||||||||||||||||||||||||||| |||| || ||||||| ||||| ||||||| ||||||||||||||| |
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| T |
39151723 |
agtactaacaataaaatatcatttcatcttactcttgatccacataaattcaaatcttcacagtgttaattcatgg |
39151648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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