View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7580_low_36 (Length: 290)

Name: NF7580_low_36
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7580_low_36
NF7580_low_36
[»] chr7 (2 HSPs)
chr7 (43-279)||(8464468-8464700)
chr7 (43-84)||(84459-84500)
[»] chr5 (4 HSPs)
chr5 (43-279)||(38064641-38064868)
chr5 (47-85)||(3136463-3136501)
chr5 (44-85)||(3136005-3136046)
chr5 (44-84)||(39148851-39148891)
[»] chr8 (2 HSPs)
chr8 (43-84)||(43433892-43433933)
chr8 (44-85)||(2319343-2319384)
[»] chr3 (4 HSPs)
chr3 (44-85)||(34873047-34873088)
chr3 (44-85)||(1259631-1259672)
chr3 (44-85)||(37242919-37242960)
chr3 (44-84)||(41041218-41041258)
[»] chr4 (4 HSPs)
chr4 (44-84)||(52869530-52869570)
chr4 (42-84)||(52532597-52532639)
chr4 (44-85)||(16989312-16989353)
chr4 (43-84)||(52533365-52533406)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 43 - 279
Target Start/End: Original strand, 8464468 - 8464700
Alignment:
Q  43 aatcttatcatacacttccaacactgtattatttcttttacacattctctctcctgcttttgattaatcaaacggttgtctgacaagtagaaaaaagagg 142  Q
    |||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||| ||    
T  8464468 aatcttatcatacactcccaacactatattatttcttttacacattatctctcctgcttttgattaatccaacggttgcctgacaagtagaaaaaagggg 8464567  T
Q  143 gcaattgaagagagagaaacatcatcttcagttttcttggtgattcttcaccactgtgcaactgcaacctcctgattttagtttgataataatccatcat 242  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||    
T  8464568 gcaattgaggagagagaaacatcatcttcagttttcttggtgattcttcaccactgtgcaactgcaacctcctgattttagtttgataat----catcat 8464663  T
Q  243 acacccaccaccccacatctcatcgtttaagcttcat 279  Q
    |||||||||||||||||||||||||||||||||||||    
T  8464664 acacccaccaccccacatctcatcgtttaagcttcat 8464700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 84459 - 84500
Alignment:
Q  43 aatcttatcatacacttccaacactgtattatttcttttaca 84  Q
    ||||||||||||||||| ||||||| ||||||||||||||||    
T  84459 aatcttatcatacacttgcaacactatattatttcttttaca 84500  T

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Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 43 - 279
Target Start/End: Complemental strand, 38064868 - 38064641
Alignment:
Q  43 aatcttatcatacacttccaacactgtattatttcttttacacattctctctcctgcttttgattaatcaaacggttgtctgacaagtagaaaaaagagg 142  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  38064868 aatcttatcatacactcccaacactatattatttcttttacacattctctctcctgcttttgattaatcaaacggttgtctgacaagtagaaaaaagggg 38064769  T
Q  143 gcaattgaagagagagaaacatcatcttcagttttcttggtgattcttcaccactgtgcaactgcaacctcctgattttagtttgataataatccatcat 242  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||              
T  38064768 gcaattgaggagagagaaacaccatcttcagttttcttggtgattcttcaccagtgtgcaactgcaacctcctgattttagtttgataat---------c 38064678  T
Q  243 acacccaccaccccacatctcatcgtttaagcttcat 279  Q
    |||||||||||||||||| ||||||||||||||||||    
T  38064677 acacccaccaccccacatgtcatcgtttaagcttcat 38064641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 3136501 - 3136463
Alignment:
Q  47 ttatcatacacttccaacactgtattatttcttttacac 85  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  3136501 ttatcatacacttccaacactgaattatttcttttacac 3136463  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 3136005 - 3136046
Alignment:
Q  44 atcttatcatacacttccaacactgtattatttcttttacac 85  Q
    ||||||||||||||||  ||||||| ||||||||||||||||    
T  3136005 atcttatcatacacttgtaacactggattatttcttttacac 3136046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 39148851 - 39148891
Alignment:
Q  44 atcttatcatacacttccaacactgtattatttcttttaca 84  Q
    ||||||| |||||||| ||||||| ||||||||||||||||    
T  39148851 atcttattatacacttgcaacactatattatttcttttaca 39148891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 43433892 - 43433933
Alignment:
Q  43 aatcttatcatacacttccaacactgtattatttcttttaca 84  Q
    |||||||||||| |||||||||||| ||||||||||||||||    
T  43433892 aatcttatcatagacttccaacactatattatttcttttaca 43433933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 2319343 - 2319384
Alignment:
Q  44 atcttatcatacacttccaacactgtattatttcttttacac 85  Q
    ||||||||||||||||  ||||||| ||||||||||||||||    
T  2319343 atcttatcatacacttgtaacactggattatttcttttacac 2319384  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 34873047 - 34873088
Alignment:
Q  44 atcttatcatacacttccaacactgtattatttcttttacac 85  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  34873047 atcttatcatacacttgtaacactgtattatttcttttacac 34873088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 1259672 - 1259631
Alignment:
Q  44 atcttatcatacacttccaacactgtattatttcttttacac 85  Q
    ||||||||||||||||  ||||||| ||||||||||||||||    
T  1259672 atcttatcatacacttgtaacactggattatttcttttacac 1259631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 37242960 - 37242919
Alignment:
Q  44 atcttatcatacacttccaacactgtattatttcttttacac 85  Q
    ||||||||||||||||  ||||||| ||||||||||||||||    
T  37242960 atcttatcatacacttgtaacactggattatttcttttacac 37242919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 41041258 - 41041218
Alignment:
Q  44 atcttatcatacacttccaacactgtattatttcttttaca 84  Q
    |||||||||||||||| || |||| ||||||||||||||||    
T  41041258 atcttatcatacacttgcagcactatattatttcttttaca 41041218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 52869530 - 52869570
Alignment:
Q  44 atcttatcatacacttccaacactgtattatttcttttaca 84  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  52869530 atcttatcatacacttgcaacactatattatttcttttaca 52869570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 52532597 - 52532639
Alignment:
Q  42 taatcttatcatacacttccaacactgtattatttcttttaca 84  Q
    ||||||||||||| ||||||||||||| ||||||| |||||||    
T  52532597 taatcttatcatagacttccaacactgaattatttattttaca 52532639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 16989312 - 16989353
Alignment:
Q  44 atcttatcatacacttccaacactgtattatttcttttacac 85  Q
    ||||||||||||||||  ||||||| ||||||||||||||||    
T  16989312 atcttatcatacacttgtaacactgaattatttcttttacac 16989353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 52533406 - 52533365
Alignment:
Q  43 aatcttatcatacacttccaacactgtattatttcttttaca 84  Q
    |||||||||||| |||||||||||| |||||||| |||||||    
T  52533406 aatcttatcatagacttccaacactatattattttttttaca 52533365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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