View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_low_4 (Length: 705)
Name: NF7580_low_4
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 650; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 1 - 705
Target Start/End: Complemental strand, 45976052 - 45975345
Alignment:
| Q |
1 |
gtgaaaattcctcaacctcttactaaccaacttccactgtttgtggagatctcctcgctccaccgggaatataccccttcaataatatacacactcagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45976052 |
gtgaaaattcctcaacctcttactaaccaacttccactgtttgtggagatctcctcgctccaccgggaatataccccttcaataatatacacactcagaa |
45975953 |
T |
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| Q |
101 |
tagcaacaacataataaggaaaaaagtga---ttatattgaagaatactactatatataccccatatttatggcaacaagttttcccagttgttcaacaa |
197 |
Q |
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| T |
45975952 |
tagcaacaacataataaggaaaaaagtgaagattatattgaagaatactactatatataccccatatttatggcaacaagttttcccagttgttcaacaa |
45975853 |
T |
|
| Q |
198 |
acaccaaggtgttctccgaagaacgatacaactcctgagctttatcatgaagtagcttcaagcgagaatcttcttgcctatcgacaagcaccacctccat |
297 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45975852 |
acaccaaggtgttctctgaagaacgatacaactcctgagctttatcatgaagtagcttcaagcgagaatcttcttgcctatcgacaagcaccacctccat |
45975753 |
T |
|
| Q |
298 |
agatgcctcgcttggttcaacggctttaagtgccatcaaagtgggtatcttcttaccttcttcctcgtcattgcacatcacccacagatacggattcatc |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45975752 |
agatgcctcgcttggttcaacggctttaagtgccatcaaagtgggtatcttcttaccttcttcctcgtcattgcacatcacccacagatacggattcatc |
45975653 |
T |
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| Q |
398 |
cccagtatgttgtaaaatccatcacttatcttatccgtatacgacaagcacccactcacctgataaccaaaaatggcatatttaatcacacaaatattat |
497 |
Q |
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| T |
45975652 |
cccagtatgttgtaaaatccatcacttatcttatccgtatatgacaagcacccactcacctgataaccaaaaatggcatatttaatcacacaaatattaa |
45975553 |
T |
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| Q |
498 |
tgaacgctagttgcaatatggttttaagttgttatctgaagctgcttcaactgcaatataaaagattttgaggtctctgcaaccacatggcatttgtaaa |
597 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45975552 |
tgaacgctagttgcaatatggttttaagttgttatctgcagctgcttcaactgcaatataaaagattttgagatctctgcaaccacatggcatttgtaaa |
45975453 |
T |
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| Q |
598 |
tttgattgcatcagcaatgttttgccgcaacatgaagttcaatagtattaaaatgcagcgaaataatacagtcaatatcgcaattcacaatcgccatgtc |
697 |
Q |
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| T |
45975452 |
tttgattgcatcaacaatgttttgccgcaacataaagttcaatagttttaaaatgcagcgaaataatgcagtcaatatcacaaatcacaatcgccatgtc |
45975353 |
T |
|
| Q |
698 |
gttgcaga |
705 |
Q |
| |
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|||||||| |
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| T |
45975352 |
gttgcaga |
45975345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 28052383 - 28052450
Alignment:
| Q |
2 |
tgaaaattcctcaacctcttactaaccaacttccactgtttgtggagatctcctcgctccaccgggaa |
69 |
Q |
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| T |
28052383 |
tgaaaattcctcaaccgcttactaaccatcttccaccttttttgcagatctccttgctccacagggaa |
28052450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 364 - 420
Target Start/End: Original strand, 28052879 - 28052935
Alignment:
| Q |
364 |
gtcattgcacatcacccacagatacggattcatccccagtatgttgtaaaatccatc |
420 |
Q |
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| T |
28052879 |
gtcattacacataacccacaaatacggattcattcccaatatgttataaaatccatc |
28052935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 251
Target Start/End: Original strand, 28052682 - 28052763
Alignment:
| Q |
170 |
gcaacaagttttcccagttgttcaacaaacaccaaggtgttctccgaagaacgatacaactcctgagctttatcatgaagta |
251 |
Q |
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| T |
28052682 |
gcaacaagttttccaagcttttcaacgagcaccaaggcattctcagaagcagaatacaactcttgagctttatcttgaagta |
28052763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 580
Target Start/End: Complemental strand, 10978584 - 10978554
Alignment:
| Q |
550 |
gcaatataaaagattttgaggtctctgcaac |
580 |
Q |
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| T |
10978584 |
gcaatataaaagattttgaggtctctgcaac |
10978554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 551 - 579
Target Start/End: Original strand, 26263995 - 26264023
Alignment:
| Q |
551 |
caatataaaagattttgaggtctctgcaa |
579 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
26263995 |
caatataaaagattttgaggtctctgcaa |
26264023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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