View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_low_41 (Length: 272)
Name: NF7580_low_41
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 2462617 - 2462357
Alignment:
| Q |
1 |
ttctccaaacaacctgagtataatggccacacactttaccagaagcacatgtgttactattataatcatagtcagctttctcattcacccacaacctcac |
100 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2462617 |
ttctccaaacaacctgggtataatggccacacactttaccagaagcacatgtgttactattataatcatagtcagctttctcattcacccacaacttcac |
2462518 |
T |
|
| Q |
101 |
tgcatctgtgccactcatgtcgccagagctccacgccagattttccccgtaacggccaccaccaccggagtggatcagttgacaatcacccttgcgttga |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462517 |
tgcatctgagccactcatgtcgccagagctccacgctagattttccccgtaacggccaccaccaccggagtggatcagttgacaatcacccttgcgttga |
2462418 |
T |
|
| Q |
201 |
ttagcatagtcttgggcaaaactagcaacagtattgtcccaaacaatatttgcaacaccaa |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462417 |
ttagcatagtcttgggcaaaactagcaacagtattgtcccaaacaatatttgcaacaccaa |
2462357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 3063380 - 3063640
Alignment:
| Q |
1 |
ttctccaaacaacctgagtataatggccacacactttaccagaagcacatgtgttactattataatcatagtcagctttctcattcacccacaacctcac |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
3063380 |
ttctccaaacaacctgagtataatggccacacactttaccagaagcacatgtgttactattataattatagtcagctttctcattcacccacaacttcac |
3063479 |
T |
|
| Q |
101 |
tgcatctgtgccactcatgtcgccagagctccacgccagattttccccgtaacggccaccaccaccggagtggatcagttgacaatcacccttgcgttga |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3063480 |
tgcatctgagccactcatgtcgccagagctccacgccagattttccccgtagcggccaccaccaccggagtggatcagttgacaatcacccttgcgttga |
3063579 |
T |
|
| Q |
201 |
ttagcatagtcttgggcaaaactagcaacagtattgtcccaaacaatatttgcaacaccaa |
261 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
3063580 |
ttagcatagtcttgggcaaaactagcaacagtattgtcccaaacaatatctccaacaccaa |
3063640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 2466665 - 2466411
Alignment:
| Q |
1 |
ttctccaaacaacctgagtataatggccacacactttaccagaagcacatgtgttactattataatcatagtcagctttctcattcacccacaacctcac |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2466665 |
ttctccaaacaacctgggtataatggccacacactttaccagaagcacatgtgttactattataatcatagtcagctttctcattcacccacaacttcac |
2466566 |
T |
|
| Q |
101 |
tgcatctgtgccactcatgtcgccagagctccacgccagattttccccgtaacggccaccaccaccggagtggatcagttgacaatcacccttgcgttga |
200 |
Q |
| |
|
|||||||| |||||| | ||| || | ||| | ||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
2466565 |
tgcatctgagccacttaagtctccggtgctacccgcgagattctccccgtaacggc------caccggagtggatcagttgacaatcacccttgtgttga |
2466472 |
T |
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| Q |
201 |
ttagcatagtcttgggcaaaactagcaacagtattgtcccaaacaatatttgcaacaccaa |
261 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2466471 |
ttagcttagtcttgagcaaaactagcaacagtattgtcccaaacaatatttgcaacaccaa |
2466411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 2458041 - 2457787
Alignment:
| Q |
1 |
ttctccaaacaacctgagtataatggccacacactttaccagaagcacatgtgttactattataatcatagtcagctttctcattcacccacaacctcac |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||| |
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| T |
2458041 |
ttctccaaacaacctgagtgtaatggccacacactttaccagaagcacatgtgttactattatagttatagtcgtttttctcattcacccacaacctcac |
2457942 |
T |
|
| Q |
101 |
tgcatctgtgccactcatgtcgccagagctccacgccagattttccccgtaacggccaccaccaccggagtggatcagttgacaatcacccttgcgttga |
200 |
Q |
| |
|
||||||||||||||||| ||| || | ||||| || ||||| |||||||||||||||||| |||||| ||||| ||||||||||| ||||| | |
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| T |
2457941 |
tgcatctgtgccactcaagtctccggtgctccctgcgagattctccccgtaacggccacca------gagtgggtcagtcgacaatcacccctgcgtgaa |
2457848 |
T |
|
| Q |
201 |
ttagcatagtcttgggcaaaactagcaacagtattgtcccaaacaatatttgcaacaccaa |
261 |
Q |
| |
|
|||||||||| |||||||| | |||||| | |||||||||| |||| |||||||||||||| |
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| T |
2457847 |
ttagcatagttttgggcaacagtagcaagattattgtcccagacaacatttgcaacaccaa |
2457787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 2469990 - 2469742
Alignment:
| Q |
1 |
ttctccaaacaacctgagtataatggccacacactttaccagaagcacatgtgttactattataatcatagtcagctttctcattcacccacaacctcac |
100 |
Q |
| |
|
|||||||||| |||||||| || |||||||||| || |||| |||||||| |||||| |||||||||||| | ||| |||| |||||||||| |||| |
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|
| T |
2469990 |
ttctccaaaccacctgagtgtagtggccacacatttcaccattagcacatgaattactactataatcatagtagggtttttcatccacccacaacttcac |
2469891 |
T |
|
| Q |
101 |
tgcatctgtgccactcatgtcgccagagctccacgccagattttccccgtaacggccaccaccaccggagtggatcagttgacaatcacccttgcgttga |
200 |
Q |
| |
|
|| ||| ||||||||||| ||||| |||| ||| | ||| || |||||||||||||||||||| ||||||| ||||||||||| ||||||||||| |
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| T |
2469890 |
cgcttctacgccactcatgttgccagtgctctccgcgatattctctccgtaacggccaccaccaccagagtggaccagttgacaat---ccttgcgttga |
2469794 |
T |
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| Q |
201 |
ttagcatagtcttgggcaaaactagcaacagtattgtcccaaacaatatttg |
252 |
Q |
| |
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|||||||||| || |||||| |||||| | ||||||||||||||||||| |
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|
| T |
2469793 |
ttagcatagttttttgcaaaagcagcaactttgttgtcccaaacaatatttg |
2469742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 18015940 - 18015680
Alignment:
| Q |
1 |
ttctccaaacaacctgagtataatggccacacactttaccagaagcacatgtgttactattataatcatagtcagctttctcattcacccacaacctcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
18015940 |
ttctccaaacaacctgagtataatggccacacactttaccagaagcacatgtgttactattataattatagtcagctttctcattcacccacaacttcac |
18015841 |
T |
|
| Q |
101 |
tgcatctgtgccactcatgtcgccagagctccacgccagattttccccgtaacggccaccaccaccggagtggatcagttgacaatcacccttgcgttga |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18015840 |
tgcatctgagccactcatgtcgccagagctccacgccagattttccccgtagcggccaccaccaccggagtggatcagttgacaatcacccttgcgttga |
18015741 |
T |
|
| Q |
201 |
ttagcatagtcttgggcaaaactagcaacagtattgtcccaaacaatatttgcaacaccaa |
261 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
18015740 |
ttagcatagtcttgggcaaaactagcaacagtattgtcccaaacaatatctccaacaccaa |
18015680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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