View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_low_45 (Length: 262)
Name: NF7580_low_45
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_low_45 |
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| [»] scaffold0223 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 13057602 - 13057836
Alignment:
| Q |
17 |
actttatgaaaacgaattttaatta-tctgtttgatgaacaaacatacctgttttattttttaataaaagaagaacatatcaagtgaagctgcttattct |
115 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13057602 |
actttatgaaaacgaattttaattactctgtttgatgaacaaacatacctgttttattttttaataaaagaagaacatatcaactgaagctgcttattct |
13057701 |
T |
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| Q |
116 |
tacttctttttattatcactacttagaactaggactgaaaacgagtttatctgagtcaaatttagttcaactcgactcgataaaaattaactcggctcaa |
215 |
Q |
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|||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13057702 |
tacttctttttattatcactgcctagaattaggactgaaaacgagtttatctgagtcaaatttagttcaactcgactcgataaaaattaactcggctcaa |
13057801 |
T |
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| Q |
216 |
aactcaactttagtttatcacaaactatttattca |
250 |
Q |
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| T |
13057802 |
aactcaactttagtttatcataaactatttattca |
13057836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 31815936 - 31815970
Alignment:
| Q |
187 |
tcgactcgataaaaattaactcggctcaaaactca |
221 |
Q |
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| T |
31815936 |
tcgactcgataaaaattaactcggctcgaaactca |
31815970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 34518953 - 34518854
Alignment:
| Q |
17 |
actttatgaaaacgaattttaatta-tctgtttgatgaacaaacatacctgtttt-atttt-ttaataaaagaagaacatatcaagtgaagctgcttatt |
113 |
Q |
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| T |
34518953 |
actttatgaaaacgacttttaattactctctttgatgaacaa-catatttattttcattttcttaataaaagaagaacatataaattgaagttgcttatt |
34518855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 49406404 - 49406368
Alignment:
| Q |
185 |
actcgactcgataaaaattaactcggctcaaaactca |
221 |
Q |
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| T |
49406404 |
actcgactcgataaaaattaactcggctcgaaactca |
49406368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 4442093 - 4442051
Alignment:
| Q |
182 |
tcaactcgactcgataaaaattaactcggctcaaaactcaact |
224 |
Q |
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| T |
4442093 |
tcaactcgactcgataagaattaattcggctcgaaactcaact |
4442051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 17439583 - 17439617
Alignment:
| Q |
186 |
ctcgactcgataaaaattaactcggctcaaaactc |
220 |
Q |
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| T |
17439583 |
ctcgactcgataaaaattaactcggctcgaaactc |
17439617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 13818 - 13850
Alignment:
| Q |
189 |
gactcgataaaaattaactcggctcaaaactca |
221 |
Q |
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| T |
13818 |
gactcgataaaaattaactcggctcgaaactca |
13850 |
T |
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