View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_low_48 (Length: 248)
Name: NF7580_low_48
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 6493660 - 6493423
Alignment:
| Q |
1 |
tgtgagggtgagatttgatctgataaaagatcnnnnnnngagaaattaatgatgttagttttagttatatattatatagaattgtttggaagttgtatgc |
100 |
Q |
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| T |
6493660 |
tgtgagggtgagatttgatcttataaaagatctttttttgagaaattaatgatgttagttttagttatatattatatagaattgtttggaagttgtatgc |
6493561 |
T |
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| Q |
101 |
catgtgtattatggtgatgtagttaactatttaactctattgcaccaaaattcgtcgacaagataattatatatttggttggttatattcaaaattctgt |
200 |
Q |
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| T |
6493560 |
catgtgtattatggtgatgtagttaactatttaactctattgcaccaaaattcgtcgacaagataattatatatttggttggttatattcaaaattctgt |
6493461 |
T |
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| Q |
201 |
cttctcaaattattatcaatgtcgtgtctgtgtctatg |
238 |
Q |
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| T |
6493460 |
tttctcaaattattatcaatgtcgtgtctgtgtctatg |
6493423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 6492461 - 6492392
Alignment:
| Q |
50 |
tgatgttagttttagttatatattatatagaattgtttggaagttgtatgccatgtgtattatggtgatg |
119 |
Q |
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| T |
6492461 |
tgatgttaattttagttatagattatatagaattgtttggaaggtgtatgccatatgtaatgtggtgatg |
6492392 |
T |
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