View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_low_5 (Length: 659)
Name: NF7580_low_5
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_low_5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 601; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 23 - 659
Target Start/End: Complemental strand, 45975305 - 45974669
Alignment:
| Q |
23 |
aaccgcgatttaaaaccattggtgcgatggtgagacgtagttaaaaaatgaaatggttgtgcaatcttgtttagttttgtacccatagacgataagaaac |
122 |
Q |
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| T |
45975305 |
aaccgcgatttaaaaccattggtgcgatggtgagatgtagttaaaaaatgaaatggttgtgcaatcttgtttagttttgtacccatagacgataagaaac |
45975206 |
T |
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| Q |
123 |
agactcagcatcccaattttcagtgccaggagtgagaacaggctccgacacaagacttgccaaagaagcaagcctcttcgctaacgtaagctgcaggata |
222 |
Q |
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| T |
45975205 |
agactcagcatcccaattttcagtgccaggagtgagaacaggctccgacacaagacttgccaaagaagcaagcctcttcgctaacgtaagctgcaggata |
45975106 |
T |
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| Q |
223 |
tagctttcttcacacttcttcaccaacccgtctttgttttcttcatcttccttctgcctcctcgcagtggttgctggaatggtggaaacttgagacgact |
322 |
Q |
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| T |
45975105 |
tagctttcttcacacttcttcaccaacccgtctttgttttcatcatcttccttctgcctcctcgcagtggttgctggaatggtggaaacttgagacgact |
45975006 |
T |
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| Q |
323 |
gcgtttcctctttaatgtcactggaaaacaaactccctgcatagctactgtcgctggatagcctcggaagtgaaacttgacggtcgaaattccggtcgat |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45975005 |
gcgtttcctctttaatgtcactggaaaacaaactccctgcatagctactgtcgctcgatagcctcggaagtgaaacttgacggtcgaaattccggtcaat |
45974906 |
T |
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| Q |
423 |
tgcggtatcattgacggctgtctctggctgagaatgaaaatagtcgtgatcgtcatcggaggttgacaagcggcggtggaagtggtgagtatgatgaccg |
522 |
Q |
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| T |
45974905 |
tgcggtgtcattgacggctgtctctggctgagaatgaaaaaagtcgtgatcgtcatcggaggttgacaagcggcggtggaagtggtgagtaagatgaccg |
45974806 |
T |
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| Q |
523 |
gagtgtcgttttttgtcgataaaccagtcgcagaaagcagatatttgcttttgtctgaatcggagtttatcaccggcgacgaaatgtttgccggaggaga |
622 |
Q |
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| T |
45974805 |
gagtgtcgttttttgtcgataaaccagtcgcagaaagcagatatttgcttttgtctgaatcggagtttatcaccggcgacggaatgtttgccggaggaga |
45974706 |
T |
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| Q |
623 |
aaacggcgtcgttttttggtgttggaggagtagacga |
659 |
Q |
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| T |
45974705 |
aaacggcatcgttttttggtgttggaggagtagacga |
45974669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 45975344 - 45975316
Alignment:
| Q |
1 |
ttttgaagtctatgcatagtttaaccgcg |
29 |
Q |
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| T |
45975344 |
ttttgaagtctatgcatagtttaaccgcg |
45975316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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