View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_low_50 (Length: 245)
Name: NF7580_low_50
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 50819042 - 50818832
Alignment:
| Q |
16 |
agaacatacataagatacaacttgtaatatggtggtgatcaatgaagaccttggtggacaaatattacacagtcctatctttagtactggtgattagtgt |
115 |
Q |
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| T |
50819042 |
agaacatacataagatacaacttgtaatatggtggtgatcaatgaagaccttggtggacaaatattacacagtcctatctttagtactagtgattagtgt |
50818943 |
T |
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| Q |
116 |
tctcagtaatcttgtcagttttccatgccttggatacaatatagtaaaaccaaaattcataatacatctaatctaatactgcatacactaatgcatgtat |
215 |
Q |
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| T |
50818942 |
tctcagtaatcttgtcagttttccatgccttggatacaatatagtaaaaccaaaattcataatacatctaatctaatactgcatacactaatgcatgtat |
50818843 |
T |
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| Q |
216 |
tatgcacttaa |
226 |
Q |
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||||||||||| |
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| T |
50818842 |
tatgcacttaa |
50818832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 50856822 - 50857032
Alignment:
| Q |
16 |
agaacatacataagatacaacttgtaatatggtggtgatcaatgaagaccttggtggacaaatattacacagtcctatctttagtactggtgattagtgt |
115 |
Q |
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| T |
50856822 |
agaacatacataagatacaacttgtaatatggtggtgatcaatgaagaccttggtggacaaatattacacagtcctatctttagtactagtgattagtgt |
50856921 |
T |
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| Q |
116 |
tctcagtaatcttgtcagttttccatgccttggatacaatatagtaaaaccaaaattcataatacatctaatctaatactgcatacactaatgcatgtat |
215 |
Q |
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| T |
50856922 |
tctcagtaatcttgtcagttttccatgccttggatacaatatagtaaaaccaaaattcataatacatctaatctaatactgcatacactaatgcatgtat |
50857021 |
T |
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| Q |
216 |
tatgcacttaa |
226 |
Q |
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| T |
50857022 |
tatgcacttaa |
50857032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 95 - 226
Target Start/End: Complemental strand, 50557489 - 50557358
Alignment:
| Q |
95 |
tttagtactggtgattagtgttctcagtaatcttgtcagttttccatgccttggatacaatatagtaaaaccaaaattcataatacatctaatctaatac |
194 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50557489 |
tttagtaccagtgattagtgttctcagtcatcttgtcagttttccatgccttggatgcaatatagtaaaaccaaaattcataatacatctaatctaatac |
50557390 |
T |
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| Q |
195 |
tgcatacactaatgcatgtattatgcacttaa |
226 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
50557389 |
tgcatacactaatgcatgtattatgcacttaa |
50557358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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