View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_low_51 (Length: 244)
Name: NF7580_low_51
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 20691390 - 20691156
Alignment:
| Q |
1 |
caaaaatattattagtgatcatgggtcccatcataacatgaaccccctcagccgccaaaagaaacataaagagggagaagggatccccttgacgcaactc |
100 |
Q |
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| T |
20691390 |
caaaaatattattagtgatcatgggttccatcataacatgaaacccctcagccgccaaaagaaacataaagagggagaagggatccccttgacgcaactc |
20691291 |
T |
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| Q |
101 |
gcgagccataggaaatccttctgtgaaggctgctatttactaatatcgatattgatgtcgcggtgacacattctttcatccatttcctccaaagagtcga |
200 |
Q |
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| T |
20691290 |
gtgagccataggaaattcttctgtg-gggctgctatttactaatatcgatattgatgtcacggtgacacattctttcatccatttcctccaaagagtcag |
20691192 |
T |
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| Q |
201 |
aaatgacattttacccataatgtcatccaagtaatt |
236 |
Q |
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| T |
20691191 |
aaatgacattttacccataacgtcatccaagtaatt |
20691156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 236
Target Start/End: Original strand, 49056943 - 49057175
Alignment:
| Q |
3 |
aaaatattattagtgatcatgggtcccatcataacatgaaccccctcagccgccaaaagaaacataaagagggagaagggatccccttgacgcaactcgc |
102 |
Q |
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| T |
49056943 |
aaaatattaccagtgatcatggaatccatcatagcatgaaagccctcagccgccaaaagaaacagaaagggagagaggggatccccttgaagcaacccac |
49057042 |
T |
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| Q |
103 |
gagccataggaaatccttctgtgaaggctgctatttactaatatcgatattgatgtcgcggtgacacattctttcatccatttcctccaaagagtc-gaa |
201 |
Q |
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| T |
49057043 |
gtgccataaggaattcttctgcc--ggatgccattgactaagactgaagctgatgttgtggtgacacatgctttcatccatttcctccaaagagtcagaa |
49057140 |
T |
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| Q |
202 |
aatgacattttacccataatgtcatccaagtaatt |
236 |
Q |
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| T |
49057141 |
aatgacattttccccataacaccatccaagtaatt |
49057175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 25133515 - 25133564
Alignment:
| Q |
163 |
gtgacacattctttcatccatttcctccaaagagtcgaaaatgacatttt |
212 |
Q |
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| T |
25133515 |
gtgacacactctttcatccatttcctccaaagggtcggaaaagacatttt |
25133564 |
T |
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Back To:
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 17952095 - 17952149
Alignment:
| Q |
166 |
acacattctttcatccatttcctccaaagagtcgaaaatgacattttacccataa |
220 |
Q |
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| T |
17952095 |
acacattctttcatccatttcctccaaagattcggaaacaccattttacctataa |
17952149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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