View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_low_53 (Length: 239)
Name: NF7580_low_53
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_low_53 |
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| [»] scaffold0225 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 19793636 - 19793854
Alignment:
| Q |
1 |
ctggctggctctacattatccctcccagtaaagatagagcacagaacacaacacaaagcatcgtgagagaatttatcatcattcatcaacagcaacaatg |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19793636 |
ctggctggctctacattatccc---cagtaaagatagagcacagaacacaacacaaagcatcgtgagagaatttatcatcattcatcaacagcaacaatg |
19793732 |
T |
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| Q |
101 |
tccttgctgtgtggttcaccatcagtgacgttcccttcatcttcttcattctctcatcacaagaattcaacttctaaatcttcctttcttgcttctcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
19793733 |
tccttgctgtgtggttcaccatcagtgacgttcccttcatcttcttcattctctcatcacaagaattcaacttctaaatcttcctttctttcttctcaat |
19793832 |
T |
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| Q |
201 |
taccactttcaaacctttcatt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
19793833 |
taccactttcaaacctttcatt |
19793854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 35738580 - 35738696
Alignment:
| Q |
85 |
atcaacagcaacaatgtccttgctgtgtggttcaccatcagtgacgttcccttcatcttcttcattctctcatcacaagaattcaacttctaaatcttcc |
184 |
Q |
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||||||| |||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
35738580 |
atcaacaacaacaatgtccttgctttgtggttcaccatcagggattgtcccttcatcttcttcattctctcatcacaagaattcaactacgaaatcttcc |
35738679 |
T |
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| Q |
185 |
tttcttgcttctcaatt |
201 |
Q |
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| T |
35738680 |
tttattacttctcaatt |
35738696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0225 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0225
Description:
Target: scaffold0225; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 9998 - 10075
Alignment:
| Q |
84 |
catcaacagcaacaatgtccttgctgtgtggttcaccatcagtgacgttcccttcatcttc-ttcattctctcatcac |
160 |
Q |
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| T |
9998 |
catcaagaacaacaacttccttgctttgtggttcaccatcagtgatgttcccttcatcttctttcattctcccatcac |
10075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 20963459 - 20963382
Alignment:
| Q |
84 |
catcaacagcaacaatgtccttgctgtgtggttcaccatcagtgacgttcccttcatcttc-ttcattctctcatcac |
160 |
Q |
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|||||| | |||||| |||||||| ||||||||||||||||||| |||| |||||| ||| ||||||||| |||||| |
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| T |
20963459 |
catcaagaacaacaacttccttgctttgtggttcaccatcagtgatgttctcttcatattctttcattctcccatcac |
20963382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 28264521 - 28264459
Alignment:
| Q |
84 |
catcaacagcaacaatgtccttgctgtgtggttcaccatcagtgacgttcccttcatcttctt |
146 |
Q |
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|||||| | |||||| |||||||| ||||||||||||| ||||| ||| ||||||||||||| |
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| T |
28264521 |
catcaagaacaacaacttccttgctttgtggttcaccattagtgatgtttccttcatcttctt |
28264459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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