View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_low_55 (Length: 236)
Name: NF7580_low_55
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_low_55 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 23470855 - 23471016
Alignment:
| Q |
42 |
cacacacgaaatataaatagatagatacgataaaatattctattgaatatccagaactgattttattgattagtagtatattctttgaacagctagtttg |
141 |
Q |
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| T |
23470855 |
cacacacgaaatataaatagatagatacgataaaatattctattgaatgtccagaactgattttattgattagtagtatattctttgaacagctagtttg |
23470954 |
T |
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| Q |
142 |
ttatttctgtttagaagcttctattctatttaatcatgactgtgtagttcaattagagtggt |
203 |
Q |
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| T |
23470955 |
ttatttctgtttagaaccttctattctatttaatcatgactgtgtagttcaattagagtggt |
23471016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 85 - 212
Target Start/End: Original strand, 23435374 - 23435501
Alignment:
| Q |
85 |
tgaatatccagaactgattttattgattagtagtatattctttgaacagctagtttgttatttctgtttagaagcttctattctatttaatcatgactgt |
184 |
Q |
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| T |
23435374 |
tgaatgtccagaactgattttattgattactagtatattctttgaacagctagtttgttagtgctgtttagaagcttctattctatttaatcatgactgt |
23435473 |
T |
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| Q |
185 |
gtagttcaattagagtggtggttggttg |
212 |
Q |
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| T |
23435474 |
gtagttcaattagagtggtggttggttg |
23435501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 23431192 - 23431229
Alignment:
| Q |
42 |
cacacacgaaatataaatagatagatacgataaaatat |
79 |
Q |
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| T |
23431192 |
cacacacgaaatataaatagatagatacgataaaatat |
23431229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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