View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7580_low_60 (Length: 224)
Name: NF7580_low_60
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_low_60 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 30964977 - 30965165
Alignment:
| Q |
19 |
attctctgaccataatttccttcacatgcacacaacattctctctttggttttggttttaatcttcattgttacttagatggaaatgaaaaggtaacatg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30964977 |
attctctgaccataatttccttcacatgcacacaacattctctctttggttttggttttaatcttcattgttacttagacggaaatgaaaaggtaacatg |
30965076 |
T |
|
| Q |
119 |
aaaaactatgctgtgcttatttacttaactatgatattcttatttacttacgatgtctggtgcttacttactatgttgtgcttataatt |
207 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30965077 |
aaaaactatgttgtgcttatttacttaactatgatattcttatttacttacgatgtttggtgcttacttactatgttgtgcttataatt |
30965165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University