View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_low_8 (Length: 598)
Name: NF7580_low_8
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 514
Target Start/End: Original strand, 25275942 - 25276422
Alignment:
| Q |
18 |
aacaaaccctgttgaattgcgtctgaaacattttgcaatgcaaagctaaaagtattggcagtaacatcatgagtcggcgcatcagaatgttaagctgcaa |
117 |
Q |
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| T |
25275942 |
aacaaaccctgttgaattgcgtctgaaacattttgcaatgcaaagctaaaagtattggcagtaacatcatgagtaggcgcatcagaatgttaagctgcaa |
25276041 |
T |
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| Q |
118 |
ctgttgccgtaatttcagagttaaccatgacttctaaaaagcgagcgaggaatcaataccaaggggatttttgcagtgtgaacagaaatccgggagccac |
217 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25276042 |
ctgttgccgtaatttcagagttaaccatgacttgtaaaaagcgagcgaggaatcaataccaaggggatttttgcagtgtgaacagaaatccgggagccac |
25276141 |
T |
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| Q |
218 |
tcataatcaacctcgacaggaaaagcaaaaccttccctttccaccatgaattcgtagatgagacgccttgaaatatcaatatccaccagcacctgtgcgt |
317 |
Q |
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| T |
25276142 |
tcataatcaacc----------------aaccttccctttccaccatgacttcgtagatgagacgccttgaaatatcaatatccaccagcacctgcgtgt |
25276225 |
T |
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| Q |
318 |
aatggccaaatgtgcgtttctgagttgcggcgtcaataataagcggagtgccaatggctcccgtaatttcgaaaagaatatagaactgacacttcatatc |
417 |
Q |
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| T |
25276226 |
aatggccaaatgtgcgtttctgagtttcggcgtcaataataagccgggtgccaatggctcccgtaatttcgaaaagaatatagaactgacacttcatatc |
25276325 |
T |
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| Q |
418 |
aaaggtttttccaatatcccacacctcacgtgtcaatgtttgacaggtatatttaaattactagaaatgttaatgtatcggtatcttaagttcaaca |
514 |
Q |
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| T |
25276326 |
aaaggtttttccaatatcccacacctcacgtgtcagtgtttgacaggtatatttaaattactagaaatgttaatgtatcagtatcttatgttcaaca |
25276422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 5570327 - 5570497
Alignment:
| Q |
17 |
caacaaaccctgttgaattgcgtctgaaacattttgcaatgcaaagctaaaagtattggcagtaacatcatgagtcggcgcatcagaatgttaagctgca |
116 |
Q |
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|||||||||||||||||||||||| |||| |||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| ||| ||| |
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| T |
5570327 |
caacaaaccctgttgaattgcgtccgaaatattttgca-----aagctaaaagtattggcaataacatcatgagtaggcgcatcagaatgtgaagttgcg |
5570421 |
T |
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| Q |
117 |
actgttgccgtaatttcagagttaacca-tgacttctaaaaagcgagcgaggaatcaataccaaggggatttttgc |
191 |
Q |
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| T |
5570422 |
actgttgccgtaatttcagagttaaccattgacttctcaaaagcgaatgaggaaccattgccaaggggatttttgc |
5570497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 525 - 582
Target Start/End: Original strand, 25276531 - 25276588
Alignment:
| Q |
525 |
cattacatggatatgtgacgcacttatctgtttttctctatatgggtatttgtgatgt |
582 |
Q |
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| T |
25276531 |
cattacatggatatgtgacacacttaactgtttttctctataagggtatttgtgatgt |
25276588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 371
Target Start/End: Complemental strand, 17705253 - 17705181
Alignment:
| Q |
299 |
tccaccagcacctgtgcgtaatggccaaatgtgcgtttctgagttgcggcgtcaataataagcggagtgccaa |
371 |
Q |
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| T |
17705253 |
tccaccagcacccgcgcataatggccaaaggtgcgtttctgagttgcggcatcaatgatgagaggagtaccaa |
17705181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 372
Target Start/End: Original strand, 23869337 - 23869413
Alignment:
| Q |
296 |
atatccaccagcacctgtgcgtaatggccaaatgtgcgtttctgagttgcggcgtcaataataagcggagtgccaat |
372 |
Q |
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| T |
23869337 |
atatccaccagcacccgcacataatggccaaaggtgcgtttctgagttgcgatatcaatgatgagaggagtgccaat |
23869413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 357
Target Start/End: Complemental strand, 17111357 - 17111295
Alignment:
| Q |
296 |
atatccaccagcacctgtgcgtaatggccaaat-gtgcgtttctgagttgcggcgtcaataat |
357 |
Q |
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| T |
17111357 |
atatccaccagcacccgcgcgtaatgaccaaaaagtacgtttttgagttgcggcgtcaataat |
17111295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 32136215 - 32136282
Alignment:
| Q |
194 |
tgtgaacagaaatccgggagccactcataatcaacctcgacaggaaaagcaaaaccttccctttccac |
261 |
Q |
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|||||||| ||||||||||||||||||||| | |||||||| |||||| | |||||||||||||| |
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| T |
32136215 |
tgtgaacaaaaatccgggagccactcataagctacctcgacgttaaaagcgtatccttccctttccac |
32136282 |
T |
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