View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7580_low_9 (Length: 544)
Name: NF7580_low_9
Description: NF7580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7580_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 13 - 526
Target Start/End: Original strand, 38056579 - 38057088
Alignment:
| Q |
13 |
aatatacggtatcagctcctgcatatgtacatcatcatcatgtccacaatcacatgtcaattattagctctttaaagcaaaataacaatgtccactcaca |
112 |
Q |
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| T |
38056579 |
aatatacggtatcagctcctggatatgaacatcatcatcatggccacaatcaca---caattattagctctttaaagcaaaataacaatgtccactcaca |
38056675 |
T |
|
| Q |
113 |
atgaacaatatgttgtt----acctaacccaatcaaaaactaaatcacaagtgatttgatttggttacaattaagtttataaaaatttattttttatttg |
208 |
Q |
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| T |
38056676 |
atgaacaatatgttgttactaacctaacccaataaaaaactaaaccacaagtgatttgatttggttacaattaagttaaaagaaatttattttttatttg |
38056775 |
T |
|
| Q |
209 |
aa-taaagttgaaaacaactcacgcccacccctgcctaacttgtctcccatagtagatttaatagatttaattagcacactttagttaatctatctattc |
307 |
Q |
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| T |
38056776 |
aattaaagttgaaaacaactcacacccactcttgcctaacttgtctcccatag---------tagatttaattagcacactttagttaatctatctattc |
38056866 |
T |
|
| Q |
308 |
cccacaactagaaattcttttataatcctaccnnnnnnngaaattcttttacaaatttgtagcatc---cgcagaacataaccgactaaaaatggtgcct |
404 |
Q |
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| T |
38056867 |
cccacaactagaaattcttttataatcctaccaaaaaaagaaattcttttacaaatttgtagcatcattcgcagaacataaccgactaaaaatgatgcct |
38056966 |
T |
|
| Q |
405 |
cttaactcacttgggttggtttggttgtattgactttgagacttaagagtgtgttttttctcgagatctcgaattcgattctctctaatacaaattttaa |
504 |
Q |
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||||||||||| |||| |||| || |||||||||||||||||| ||||||| || ||||||||||| | ||||| |||||||||| || |||||| | |
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| T |
38056967 |
tttaactcacttaggtttgtttagtggtattgactttgagactttagagtgtattctttctcgagattttgaatttgattctctctgatgttaattttga |
38057066 |
T |
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| Q |
505 |
gtggcttaatttaacttcttaa |
526 |
Q |
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|||||||||||||||||||||| |
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| T |
38057067 |
gtggcttaatttaacttcttaa |
38057088 |
T |
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