View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7581_high_2 (Length: 413)

Name: NF7581_high_2
Description: NF7581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7581_high_2
NF7581_high_2
[»] chr2 (9 HSPs)
chr2 (276-413)||(29455268-29455407)
chr2 (150-261)||(7574014-7574125)
chr2 (150-261)||(16668609-16668720)
chr2 (153-261)||(41646633-41646742)
chr2 (276-321)||(43564151-43564196)
chr2 (224-261)||(43564267-43564304)
chr2 (221-261)||(29455477-29455517)
chr2 (150-180)||(29455527-29455557)
chr2 (150-180)||(43564317-43564347)
[»] chr7 (5 HSPs)
chr7 (150-261)||(5767987-5768098)
chr7 (150-261)||(25419498-25419609)
chr7 (150-261)||(47233745-47233856)
chr7 (188-261)||(39066831-39066904)
chr7 (150-257)||(44393780-44393881)
[»] chr5 (3 HSPs)
chr5 (150-261)||(36991151-36991262)
chr5 (150-261)||(21604992-21605101)
chr5 (206-261)||(37301967-37302022)
[»] chr4 (10 HSPs)
chr4 (150-261)||(46092411-46092522)
chr4 (150-261)||(46134936-46135047)
chr4 (150-261)||(53830428-53830539)
chr4 (150-261)||(2504924-2505035)
chr4 (150-261)||(34737725-34737833)
chr4 (151-261)||(5430821-5430927)
chr4 (206-261)||(20036391-20036446)
chr4 (150-261)||(2500570-2500678)
chr4 (150-261)||(21803004-21803111)
chr4 (206-255)||(21632748-21632797)
[»] chr3 (4 HSPs)
chr3 (150-261)||(48266372-48266483)
chr3 (150-261)||(35870451-35870562)
chr3 (150-261)||(52349834-52349945)
chr3 (150-251)||(26215432-26215529)
[»] chr6 (2 HSPs)
chr6 (150-261)||(13433376-13433487)
chr6 (150-261)||(16712037-16712143)
[»] chr1 (4 HSPs)
chr1 (150-261)||(13786337-13786448)
chr1 (150-261)||(25807694-25807806)
chr1 (151-261)||(22912455-22912562)
chr1 (214-261)||(23726012-23726058)
[»] scaffold0516 (1 HSPs)
scaffold0516 (206-261)||(3355-3410)
[»] chr8 (7 HSPs)
chr8 (150-261)||(10186462-10186569)
chr8 (206-261)||(8150470-8150525)
chr8 (150-261)||(11428069-11428176)
chr8 (150-257)||(20172070-20172171)
chr8 (221-261)||(918949-918989)
chr8 (206-261)||(4138432-4138487)
chr8 (280-313)||(919075-919108)


Alignment Details
Target: chr2 (Bit Score: 93; Significance: 4e-45; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 276 - 413
Target Start/End: Complemental strand, 29455407 - 29455268
Alignment:
Q  276 catataataagtgttgtcaattattaatcaaaaattaaggaaatgannnnnnnngggttgtaaatgggagttacaaatgtcagccgca--catgtatttg 373  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||  ||||||||||    
T  29455407 catataataagtgttatcaattattaatcaaaaattaaggaaatgattttttttgggttgtaaatgggagttacaaatgtcagccgcatacatgtatttg 29455308  T
Q  374 taattatgtgtaactgacaatattaggagacacataaata 413  Q
    ||  ||||||||||||||||||||||||||||||||||||    
T  29455307 tatatatgtgtaactgacaatattaggagacacataaata 29455268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 7574014 - 7574125
Alignment:
Q  150 gataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 249  Q
    |||||||||||||||||||||||||||||||       ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  7574014 gataacataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaataaatttgtgtgtgtaagaggattgattaagaatatgaataatt 7574113  T
Q  250 ttaaaatgtaac 261  Q
    ||||||||||||    
T  7574114 ttaaaatgtaac 7574125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 16668609 - 16668720
Alignment:
Q  150 gataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 249  Q
    |||||||||||||||||||||||||||||||       ||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||    
T  16668609 gataacataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaataaatttgtgtgtgtaagaggattgatcaagaatatgaataatt 16668708  T
Q  250 ttaaaatgtaac 261  Q
    ||||||||||||    
T  16668709 ttaaaatgtaac 16668720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 153 - 261
Target Start/End: Original strand, 41646633 - 41646742
Alignment:
Q  153 aacataagcaacatatatataagcttagnnnnnnn-tgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatttt 251  Q
    ||||||||||||||||||||||||||||        ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41646633 aacataagcaacatatatataagcttagaaaaaaaatgaggagctttatagtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatttt 41646732  T
Q  252 aaaatgtaac 261  Q
    ||||||||||    
T  41646733 aaaatgtaac 41646742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 43564196 - 43564151
Alignment:
Q  276 catataataagtgttgtcaattattaatcaaaaattaaggaaatga 321  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  43564196 catataataagtgttgtcaattattaatcaaaaattaaggtaatga 43564151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 43564304 - 43564267
Alignment:
Q  224 aggattgattaagaatatgaataattttaaaatgtaac 261  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43564304 aggattgattaagaatatgaataattttaaaatgtaac 43564267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 29455517 - 29455477
Alignment:
Q  221 aagaggattgattaagaatatgaataattttaaaatgtaac 261  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  29455517 aagaggattaattaagaatatgaataattttaaaatgtaac 29455477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 180
Target Start/End: Complemental strand, 29455557 - 29455527
Alignment:
Q  150 gataacataagcaacatatatataagcttag 180  Q
    |||||||||||||||||||||||||||||||    
T  29455557 gataacataagcaacatatatataagcttag 29455527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 180
Target Start/End: Complemental strand, 43564347 - 43564317
Alignment:
Q  150 gataacataagcaacatatatataagcttag 180  Q
    |||||||||||||||||||||||||||||||    
T  43564347 gataacataagcaacatatatataagcttag 43564317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 5767987 - 5768098
Alignment:
Q  150 gataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 249  Q
    |||||||||||||||||||||||||||||||       ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5767987 gataacataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 5768086  T
Q  250 ttaaaatgtaac 261  Q
    ||||||||||||    
T  5768087 ttaaaatgtaac 5768098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 25419498 - 25419609
Alignment:
Q  150 gataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 249  Q
    |||||||||||||||||||||||||||||||       ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  25419498 gataacataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaataaatttgtgtgtgtaagaggattgattaagaatatgaataatt 25419597  T
Q  250 ttaaaatgtaac 261  Q
    ||||||||||||    
T  25419598 ttaaaatgtaac 25419609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 47233745 - 47233856
Alignment:
Q  150 gataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 249  Q
    ||||| ||||||||||||||||||||||||        ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47233745 gataatataagcaacatatatataagcttataaaaaaatgaggagctttatagtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 47233844  T
Q  250 ttaaaatgtaac 261  Q
    ||||||||||||    
T  47233845 ttaaaatgtaac 47233856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 39066831 - 39066904
Alignment:
Q  188 tgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataattttaaaatgtaac 261  Q
    |||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39066831 tgaggagccttatagtaataaacttgtatgtgtaagaggattgattaagaatatgaataattttaaaatgtaac 39066904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 150 - 257
Target Start/End: Complemental strand, 44393881 - 44393780
Alignment:
Q  150 gataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 249  Q
    ||||||||||||||||||||||| |||||||       ||||||||||||| ||||   |||||||||||||||| |||||| |||||||||||||||||    
T  44393881 gataacataagcaacatatatatgagcttagaaaa---tgaggagctttatagtaa---acttgtgtgtgtaagatgattgactaagaatatgaataatt 44393788  T
Q  250 ttaaaatg 257  Q
    ||||||||    
T  44393787 ttaaaatg 44393780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 36991262 - 36991151
Alignment:
Q  150 gataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 249  Q
    |||||||||||||||||||||||||||||||       ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36991262 gataacataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 36991163  T
Q  250 ttaaaatgtaac 261  Q
    ||||||||||||    
T  36991162 ttaaaatgtaac 36991151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 21604992 - 21605101
Alignment:
Q  150 gataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 249  Q
    ||||||||||||||||||||||  |||||||       ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21604992 gataacataagcaacatatata--agcttagaaaaaaatgaggagctttatagtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 21605089  T
Q  250 ttaaaatgtaac 261  Q
    ||||||| ||||    
T  21605090 ttaaaatttaac 21605101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 37301967 - 37302022
Alignment:
Q  206 taaacttgtgtgtgtaagaggattgattaagaatatgaataattttaaaatgtaac 261  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37301967 taaacttgtgtgtgtaagtggattgattaagaatatgaataattttaaaatgtaac 37302022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 46092522 - 46092411
Alignment:
Q  150 gataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 249  Q
    |||||||||||||||||||||||||||||||       ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46092522 gataacataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 46092423  T
Q  250 ttaaaatgtaac 261  Q
    ||||||||||||    
T  46092422 ttaaaatgtaac 46092411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 46135047 - 46134936
Alignment:
Q  150 gataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 249  Q
    |||||||||||||||||||||||||||||||       ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46135047 gataacataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 46134948  T
Q  250 ttaaaatgtaac 261  Q
    ||||||||||||    
T  46134947 ttaaaatgtaac 46134936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 53830428 - 53830539
Alignment:
Q  150 gataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 249  Q
    |||||||||||||||||||||||||||||||       ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  53830428 gataacataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 53830527  T
Q  250 ttaaaatgtaac 261  Q
    ||||||||||||    
T  53830528 ttaaaatgtaac 53830539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 2504924 - 2505035
Alignment:
Q  150 gataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 249  Q
    |||||||||||||||||||||||||||||||       ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  2504924 gataacataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaataaatttgtgtgtgtaagaggattgattaagaatatgaataatt 2505023  T
Q  250 ttaaaatgtaac 261  Q
    ||||||||||||    
T  2505024 ttaaaatgtaac 2505035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 34737725 - 34737833
Alignment:
Q  150 gataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 249  Q
    |||||||||||||||||||||||||||||||       ||||||||||||| ||||   |||||||||||||||||||||||| ||||||||||||||||    
T  34737725 gataacataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaa---acttgtgtgtgtaagaggattgatcaagaatatgaataatt 34737821  T
Q  250 ttaaaatgtaac 261  Q
    ||||||||||||    
T  34737822 ttaaaatgtaac 34737833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 151 - 261
Target Start/End: Complemental strand, 5430927 - 5430821
Alignment:
Q  151 ataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataattt 250  Q
    |||||||||||||||||||||| |||||||       ||||||| ||||| ||||   |||||||||||||||| |||||| ||||||||||||||||||    
T  5430927 ataacataagcaacatatatatgagcttagaaaaaa-tgaggagttttatagtaa---acttgtgtgtgtaagatgattgactaagaatatgaataattt 5430832  T
Q  251 taaaatgtaac 261  Q
    |||||||||||    
T  5430831 taaaatgtaac 5430821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 20036446 - 20036391
Alignment:
Q  206 taaacttgtgtgtgtaagaggattgattaagaatatgaataattttaaaatgtaac 261  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  20036446 taaacttgtgagtgtaagaggattgattaagaatatgattaattttaaaatgtaac 20036391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 2500570 - 2500678
Alignment:
Q  150 gataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 249  Q
    ||||| ||||||||||||||| |||||||||       |||| || ||||| ||||   |||||||||||||||||||||||| |||||||  |||||||    
T  2500570 gataatataagcaacatatatgtaagcttagaaaaaaatgagtagatttatagtaa---acttgtgtgtgtaagaggattgatcaagaatacaaataatt 2500666  T
Q  250 ttaaaatgtaac 261  Q
    ||||||||||||    
T  2500667 ttaaaatgtaac 2500678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 21803111 - 21803004
Alignment:
Q  150 gataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 249  Q
    |||||||||||||||| ||| ||||||||||       ||||||||||||| ||||   ||||||||||||||||  |||||||||||||||||| ||||    
T  21803111 gataacataagcaacacata-ataagcttagaaaaaaatgaggagctttatagtaa---acttgtgtgtgtaagattattgattaagaatatgaacaatt 21803016  T
Q  250 ttaaaatgtaac 261  Q
    |||||| |||||    
T  21803015 ttaaaacgtaac 21803004  T

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Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 21632748 - 21632797
Alignment:
Q  206 taaacttgtgtgtgtaagaggattgattaagaatatgaataattttaaaa 255  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  21632748 taaacttgtgtgtgtaagaagattgattaagaatatgaacaattttaaaa 21632797  T

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Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 48266483 - 48266372
Alignment:
Q  150 gataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 249  Q
    |||||||||||||||||||||||||||||||       ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48266483 gataacataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 48266384  T
Q  250 ttaaaatgtaac 261  Q
    ||||||||||||    
T  48266383 ttaaaatgtaac 48266372  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 35870562 - 35870451
Alignment:
Q  150 gataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 249  Q
    |||||||||||||||||||||||||| ||||       |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35870562 gataacataagcaacatatatataagtttagaaaaaaatgaggacctttatagtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 35870463  T
Q  250 ttaaaatgtaac 261  Q
    ||||||||||||    
T  35870462 ttaaaatgtaac 35870451  T

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Target: chr3; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 52349945 - 52349834
Alignment:
Q  150 gataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 249  Q
    |||||||||||||||||||||||||||||||       ||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||    
T  52349945 gataacataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaataaatttgtgtgtgtaagaggattgattaagaatataaataatt 52349846  T
Q  250 ttaaaatgtaac 261  Q
    ||||||||||||    
T  52349845 ttaaaatgtaac 52349834  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 150 - 251
Target Start/End: Complemental strand, 26215529 - 26215432
Alignment:
Q  150 gataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 249  Q
    ||||||||||||||||||||||| |||||||       ||||||||||||| ||||   |||||||||||||||| |||||| |||||||||||||||||    
T  26215529 gataacataagcaacatatatatgagcttagaaaaaa-tgaggagctttatagtaa---acttgtgtgtgtaagatgattgactaagaatatgaataatt 26215434  T

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Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 13433376 - 13433487
Alignment:
Q  150 gataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 249  Q
    |||||||||||||||||||||||||||||||       ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  13433376 gataacataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaataaatttgtgtgtgtaagaggattgattaagaatatgaataatt 13433475  T
Q  250 ttaaaatgtaac 261  Q
    ||||||||||||    
T  13433476 ttaaaatgtaac 13433487  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 16712037 - 16712143
Alignment:
Q  150 gataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 249  Q
    ||||||||||||||||||||||| |||||||       ||||||| |||||||| |   ||  |||||||||||| ||||||||||||||||||||||||    
T  16712037 gataacataagcaacatatatatgagcttagaaaaaaatgaggagttttatggtga---ac--gtgtgtgtaagatgattgattaagaatatgaataatt 16712131  T
Q  250 ttaaaatgtaac 261  Q
    ||||||||||||    
T  16712132 ttaaaatgtaac 16712143  T

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Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 13786448 - 13786337
Alignment:
Q  150 gataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 249  Q
    |||||||||||||||||||||||||||||||       ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  13786448 gataacataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaataaatttgtgtgtgtaagaggattgattaagaatatgaataatt 13786349  T
Q  250 ttaaaatgtaac 261  Q
    ||||||||||||    
T  13786348 ttaaaatgtaac 13786337  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 25807694 - 25807806
Alignment:
Q  150 gataacataagcaacatatatataagcttagnnnnnnn-tgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataat 248  Q
    ||||||||||| |||||||||||||||||||        ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  25807694 gataacataagaaacatatatataagcttagaaaaaaaatgaggagctttatagtaataaacttgtgtgtgtaagaggattgattaagaatatgaataat 25807793  T
Q  249 tttaaaatgtaac 261  Q
    |||||||||||||    
T  25807794 tttaaaatgtaac 25807806  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 151 - 261
Target Start/End: Original strand, 22912455 - 22912562
Alignment:
Q  151 ataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataattt 250  Q
    ||||||||||||||||||||||||||||||       |||||||||| || ||||   | | ||||||||||||||||||||||||||||||||||||||    
T  22912455 ataacataagcaacatatatataagcttagaaaaaaatgaggagcttaatagtaa---attcgtgtgtgtaagaggattgattaagaatatgaataattt 22912551  T
Q  251 taaaatgtaac 261  Q
    |||||||||||    
T  22912552 taaaatgtaac 22912562  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 23726012 - 23726058
Alignment:
Q  214 tgtgtgtaagaggattgattaagaatatgaataattttaaaatgtaac 261  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||    
T  23726012 tgtgtgcaagaggattgattaagaatatgaataa-tttaaaatgtaac 23726058  T

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Target: scaffold0516 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 3410 - 3355
Alignment:
Q  206 taaacttgtgtgtgtaagaggattgattaagaatatgaataattttaaaatgtaac 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3410 taaacttgtgtgtgtaagaggattgattaagaatatgaataattttaaaatgtaac 3355  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 10186569 - 10186462
Alignment:
Q  150 gataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 249  Q
    |||||||||||||||| ||| |||||||| |       ||||||||||||| ||||   |||||||||||||||||||||||||||||||||||| ||||    
T  10186569 gataacataagcaacacata-ataagcttggaaaaaaatgaggagctttatagtaa---acttgtgtgtgtaagaggattgattaagaatatgaacaatt 10186474  T
Q  250 ttaaaatgtaac 261  Q
    ||||||||||||    
T  10186473 ttaaaatgtaac 10186462  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 8150470 - 8150525
Alignment:
Q  206 taaacttgtgtgtgtaagaggattgattaagaatatgaataattttaaaatgtaac 261  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8150470 taaacttgtgtgtgtaagaggactgattaagaatatgaataattttaaaatgtaac 8150525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 11428069 - 11428176
Alignment:
Q  150 gataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 249  Q
    ||||||||||||||||||||||| |||||||       ||||||||||||| ||||   |||| ||||||||||| |||||| |||||||||||||||||    
T  11428069 gataacataagcaacatatatatgagcttagaaaaaa-tgaggagctttatcgtaa---acttctgtgtgtaagatgattgactaagaatatgaataatt 11428164  T
Q  250 ttaaaatgtaac 261  Q
    ||||||||||||    
T  11428165 ttaaaatgtaac 11428176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 150 - 257
Target Start/End: Complemental strand, 20172171 - 20172070
Alignment:
Q  150 gataacataagcaacatatatataagcttagnnnnnnntgaggagctttatggtaataaacttgtgtgtgtaagaggattgattaagaatatgaataatt 249  Q
    ||||||||||||||||||||||| |||||||       ||||||||||||| ||||   |||||||||||||||| |||||| |||||||||||||||||    
T  20172171 gataacataagcaacatatatatgagcttagaaaa---tgaggagctttatagtaa---acttgtgtgtgtaagatgattgactaagaatatgaataatt 20172078  T
Q  250 ttaaaatg 257  Q
    ||||||||    
T  20172077 ttaaaatg 20172070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 918949 - 918989
Alignment:
Q  221 aagaggattgattaagaatatgaataattttaaaatgtaac 261  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  918949 aagaggattgattaagaatatgaataattttaaaatgtaac 918989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 4138487 - 4138432
Alignment:
Q  206 taaacttgtgtgtgtaagaggattgattaagaatatgaataattttaaaatgtaac 261  Q
    ||||||||||||||||||||  ||||||||||||||||| |||||||||| |||||    
T  4138487 taaacttgtgtgtgtaagagtcttgattaagaatatgaacaattttaaaacgtaac 4138432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 313
Target Start/End: Original strand, 919075 - 919108
Alignment:
Q  280 taataagtgttgtcaattattaatcaaaaattaa 313  Q
    |||||||||||||||||||| |||||||||||||    
T  919075 taataagtgttgtcaattatcaatcaaaaattaa 919108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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