View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7581_high_4 (Length: 293)
Name: NF7581_high_4
Description: NF7581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7581_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 38420905 - 38420640
Alignment:
| Q |
18 |
actttgaatgaaacagaattactagttttcctatatatcatatgatttttcgcatacagtttctttctctcttagcctttatttctctcatcagacacgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
38420905 |
actttgaatgaaacagaattactagttttcctatatatcatatgatttttcgcatacagtttctttctct--tagcctttatctctctcatcagacacgt |
38420808 |
T |
|
| Q |
118 |
gtcatacttcacccctcaattcggtaattctgttatgctatatagcttctatatatatatcacattcacagctgctttttaattaaatctaatattctgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38420807 |
gtcatacttcacccctcaattcggtaattctgttatgctatatagcttctatatatatatcacattcacagctgcttt----ttaaatctaatattctgc |
38420712 |
T |
|
| Q |
218 |
taccaag----ttaggttagggtttttcataccttctttcactttgcatccttcaacacacaacttcttctc |
285 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38420711 |
taccaagttaattaggttagggtttttcataccttctttcactttgcatccttcaacacacaacttcttctc |
38420640 |
T |
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