View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7581_high_6 (Length: 273)
Name: NF7581_high_6
Description: NF7581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7581_high_6 |
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| [»] scaffold1099 (1 HSPs) |
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Alignment Details
Target: scaffold1099 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold1099
Description:
Target: scaffold1099; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 1808 - 1563
Alignment:
| Q |
16 |
caaatttaatttgttaaattcaattagatgatataaaaatagacaccaagtactatagaaagaacatgtctttgatgtttgaagagaattaccatgtgcg |
115 |
Q |
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| T |
1808 |
caaatttaatttgttaaattcaattagatgatataaaaatagacactaagtactatagaaagaacatgtctttgatgtttgaagagaattaccgtgtgcg |
1709 |
T |
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| Q |
116 |
ttgtaaaaggaataaaaataaacaatgtaaagaagtttagaatcaataaatacacttctaggaatggctcctgcagttctgccgcttttcataaacagat |
215 |
Q |
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| T |
1708 |
ttgtaaaaggaataaaaataaacaatgtaaagaagtttagaaccaataaatacacttctaggaatggcttctgcagttctgccgcttttcataaacagat |
1609 |
T |
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| Q |
216 |
ttgagtcttataaaatgaatggggcaatttaaaaggtaattgttga |
261 |
Q |
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| T |
1608 |
ttgagtcttataaaatgaatggggcaatttaaaaggtaattgttga |
1563 |
T |
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