View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7581_low_1 (Length: 480)
Name: NF7581_low_1
Description: NF7581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7581_low_1 |
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| [»] scaffold0078 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 26992847 - 26992370
Alignment:
| Q |
1 |
aggtatggtaggttggacgaaattgctattctctgctgccattgtcgttcctttaacaaacctttggtgtttctctcacagcgagtctcacagtgtttca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26992847 |
aggtatggtaggttggacgaaattgctattctctgctgccattgtcgttcctttaacaaacctttggtgtttctctcacagcgagtctcacagcgtttca |
26992748 |
T |
|
| Q |
101 |
ctcttactggagttctaactctcactaagaaaacttcagtttctcaactctcaatttccaaaacaccaggccccgtgagaagctctgataccataattgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26992747 |
ctcttactggagttctaactctcactaagaaaacttcagtttctcaactctcaatttccaaaacaccaggccccgtgagaagctctgataccataattgt |
26992648 |
T |
|
| Q |
201 |
tgaacataaaaattaaggggaatgctctcttattttattcagttgcaaatactagccttacaaagaaagaaaataaactaagtcactccactaacacaaa |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26992647 |
tgaacataaaaattaaggggaatgctctcttattttattcagttgcaaatactagccttacaaagaaagaaaataaactaagtcactccactaacacaaa |
26992548 |
T |
|
| Q |
301 |
cgtggaatgtggagaaaactaaccaagtcccagtaataagtc-------gtagagactattgaccaaaagatagaaacaaatactaataaatatgacagc |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26992547 |
cgtggaatgtggagaaaactaaccaagtcccagtaataagtcttaagaagtagggactattgaccaaaagatagaaacaaatactaataaatatgagagc |
26992448 |
T |
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| Q |
394 |
cagcaaagcaacagtattgtcattnnnnnnnnnnnncatataagtttgaatttttctaattacaccccatatattctt |
471 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26992447 |
cagcaaagcaacagtattgtcattaaaaaataaaaacatataagtttgaatttttctaattacaccccatatattctt |
26992370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 1755488 - 1755809
Alignment:
| Q |
1 |
aggtatggtaggttggacgaaattgctattctctgctgccattgtcgttcctttaacaaacctttggtgtttctctcacagcgagtctcacagtgtttca |
100 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||| | |||| |||| ||||||||| || |||||||| || |||||||||||||| |
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| T |
1755488 |
aggtatggcaggttggacgaaattgctattctctgctgccattattgttcttttatcaaacctttagtatttctctctcaattagtctcacagtgtt--- |
1755584 |
T |
|
| Q |
101 |
ctcttactggagttctaactctcactaagaaaacttcagtttctcaactctcaatttc-caaaacaccaggccccgtgagaagctctgataccataattg |
199 |
Q |
| |
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| || ||||| |||||||||||| ||||||||||||||| ||| |||||||||| |||||||||||| ||||| ||||| |
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| T |
1755585 |
---------------ttaccctcaccaagaaaacttcaatttctcaactctcaaattctaaaaacaccagaccccgtgagaag------taccaaaattg |
1755663 |
T |
|
| Q |
200 |
ttgaacataaaaattaaggggaatgctctcttattttattcagttgcaaatactagcct-tacaaag-------aaagaaaataaactaagtcactccac |
291 |
Q |
| |
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||||||| |||||||| || |||||||| |||||||||||| ||| |||| |||| | || |||| ||| |||| ||| |||| ||||||| |
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| T |
1755664 |
ttgaaca-gaaaattaaaggaaatgctcttttattttattcaactgc-aatagtagcttatataaagccttacaaaaaaaaaaaaaaaaagttactccac |
1755761 |
T |
|
| Q |
292 |
taacacaaacgtggaatgtggagaaaactaaccaagtcccagtaataa |
339 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||| |||||| |
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| T |
1755762 |
taacaaaaacgtggaatgtggagaaaactaattaagtcccactaataa |
1755809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 277 - 342
Target Start/End: Original strand, 1751391 - 1751456
Alignment:
| Q |
277 |
actaagtcactccactaacacaaacgtggaatgtggagaaaactaaccaagtcccagtaataagtc |
342 |
Q |
| |
|
||||| ||| |||||||||| |||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
1751391 |
actaactcagtccactaacagaaacgtggaatgtggagaaaactaactaagtcccactaataagtc |
1751456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 277 - 393
Target Start/End: Original strand, 45000058 - 45000181
Alignment:
| Q |
277 |
actaagtcactccactaacacaaacgtggaatgtggagaaaactaaccaagtcccagtaataagtc-------gtagagactattgaccaaaagatagaa |
369 |
Q |
| |
|
||||| ||| |||||||||| |||||||||||||||||||||||||| |||||||| |||||| || |||| || |||| || |||||||||| |
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| T |
45000058 |
actaactcagtccactaacagaaacgtggaatgtggagaaaactaactaagtcccactaataaatcctaagaagtagggattattaacttaaagatagaa |
45000157 |
T |
|
| Q |
370 |
acaaatactaataaatatgacagc |
393 |
Q |
| |
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||| |||||||||| ||||||||| |
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| T |
45000158 |
acagatactaataactatgacagc |
45000181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 1751300 - 1751332
Alignment:
| Q |
209 |
aaaattaaggggaatgctctcttattttattca |
241 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
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| T |
1751300 |
aaaattaaagggaatgctctcttattttattca |
1751332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 277 - 342
Target Start/End: Complemental strand, 4832399 - 4832334
Alignment:
| Q |
277 |
actaagtcactccactaacacaaacgtggaatgtggagaaaactaaccaagtcccagtaataagtc |
342 |
Q |
| |
|
||||| ||| |||||||||| |||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
4832399 |
actaactcagtccactaacaaaaacgtggaatgtggagaaaactaactaagtcccactaataagtc |
4832334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 241
Target Start/End: Complemental strand, 4832499 - 4832458
Alignment:
| Q |
198 |
tgttgaacataaaaattaaggggaatgctctcttattttattca |
241 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||| |
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|
| T |
4832499 |
tgttgaacataaaa--taaagggaatgctctcttattttattca |
4832458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 342
Target Start/End: Complemental strand, 19351 - 19286
Alignment:
| Q |
277 |
actaagtcactccactaacacaaacgtggaatgtggagaaaactaaccaagtcccagtaataagtc |
342 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||||||||||||||| || |||||||| ||||||||| |
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|
| T |
19351 |
actaactcagtccactaacagaaacgtggaatgtggagaaaactcactaagtcccactaataagtc |
19286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 254 - 295
Target Start/End: Complemental strand, 19387 - 19346
Alignment:
| Q |
254 |
agccttacaaagaaagaaaataaactaagtcactccactaac |
295 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||| |
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|
| T |
19387 |
agccttacaaagaaagaaaataaattaagttactccactaac |
19346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 342
Target Start/End: Complemental strand, 37254071 - 37254006
Alignment:
| Q |
277 |
actaagtcactccactaacacaaacgtggaatgtggagaaaactaaccaagtcccagtaataagtc |
342 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||||||||||||||| || |||||||| ||||||||| |
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|
| T |
37254071 |
actaactcagtccactaacagaaacgtggaatgtggagaaaactcactaagtcccactaataagtc |
37254006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 254 - 295
Target Start/End: Complemental strand, 37254107 - 37254066
Alignment:
| Q |
254 |
agccttacaaagaaagaaaataaactaagtcactccactaac |
295 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||| |
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|
| T |
37254107 |
agccttacaaagaaagaaaataaattaagttactccactaac |
37254066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 12793796 - 12793722
Alignment:
| Q |
125 |
ctaagaaaacttcagtttctcaactctcaatttccaaaa-caccaggccccgtgagaagctctgataccataatt |
198 |
Q |
| |
|
||||||||||| |||||||| | ||||||| |||| ||| ||||||||| |||||||||||||||||||| |||| |
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|
| T |
12793796 |
ctaagaaaactgcagtttcttagctctcaaattcccaaatcaccaggcctcgtgagaagctctgataccacaatt |
12793722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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