View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7581_low_2 (Length: 439)

Name: NF7581_low_2
Description: NF7581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7581_low_2
NF7581_low_2
[»] chr2 (4 HSPs)
chr2 (130-433)||(14953395-14953698)
chr2 (14-100)||(14953277-14953363)
chr2 (13-80)||(40833270-40833336)
chr2 (13-86)||(14002214-14002287)
[»] chr7 (3 HSPs)
chr7 (130-433)||(4561422-4561725)
chr7 (14-100)||(4561762-4561848)
chr7 (13-81)||(1101734-1101801)
[»] chr8 (2 HSPs)
chr8 (130-433)||(5370525-5370828)
chr8 (14-100)||(5370406-5370492)
[»] chr3 (2 HSPs)
chr3 (13-84)||(46697191-46697262)
chr3 (235-272)||(46697010-46697047)
[»] chr6 (1 HSPs)
chr6 (13-78)||(23885849-23885914)
[»] chr4 (1 HSPs)
chr4 (13-81)||(56398469-56398536)
[»] chr1 (1 HSPs)
chr1 (13-86)||(6284577-6284650)
[»] chr5 (1 HSPs)
chr5 (21-53)||(37606037-37606069)


Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 130 - 433
Target Start/End: Original strand, 14953395 - 14953698
Alignment:
Q  130 cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgccgtctctctacaaccaccgccgtctaagctctcacctacaactgcttt 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  14953395 cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgctgtctctctacaaccaccgccgtctaagctctcacctaccactgcttt 14953494  T
Q  230 ctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttccgcttctgcaaacgacctgcaactctcagattccgatcacca 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  14953495 ctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttccgcttctgcaaacgacctgcaactctcagattccgatcactg 14953594  T
Q  330 actgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccacttctactgtcaccac 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14953595 actgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccacttctgctgtcaccac 14953694  T
Q  430 caaa 433  Q
    ||||    
T  14953695 caaa 14953698  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 14953277 - 14953363
Alignment:
Q  14 acatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatacatcagtgttccttcttcttc 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14953277 acatcaaaatacaaacacaaatttgacaccaaacactgttcaccgtatatttatacggtatttatacatcagtgttccttcttcttc 14953363  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 40833336 - 40833270
Alignment:
Q  13 gacatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatac 80  Q
    ||||||||| |||||| |||||| |||||||||| | |||| ||||||| ||||||||||||||||||    
T  40833336 gacatcaaattacaaa-acaaatttgacaccaaatattgttgaccgtatgtttatacggtatttatac 40833270  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 14002287 - 14002214
Alignment:
Q  13 gacatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatacatcagt 86  Q
    |||||||||||||||| ||||||  |||| ||||||  |||| |  ||||||||||||||||| ||||| ||||    
T  14002287 gacatcaaaatacaaatacaaattagacatcaaacaaagttcgcaatatatttatacggtattgatacaccagt 14002214  T

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Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 130 - 433
Target Start/End: Complemental strand, 4561725 - 4561422
Alignment:
Q  130 cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgccgtctctctacaaccaccgccgtctaagctctcacctacaactgcttt 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  4561725 cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgctgtctctctacaaccaccgccgtctaagctctcacctaccactgcttt 4561626  T
Q  230 ctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttccgcttctgcaaacgacctgcaactctcagattccgatcacca 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||     
T  4561625 ctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttccacttctgcaaacgacctgcaactctcagattcagatcaccg 4561526  T
Q  330 actgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccacttctactgtcaccac 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4561525 actgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccacttctgctgtcaccac 4561426  T
Q  430 caaa 433  Q
    ||||    
T  4561425 caaa 4561422  T

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Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 4561848 - 4561762
Alignment:
Q  14 acatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatacatcagtgttccttcttcttc 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4561848 acatcaaaatacaaacacaaatttgacaccaaacactgttcaccgtatatttatacggtatttatacatcagtgttccttcttcttc 4561762  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 1101801 - 1101734
Alignment:
Q  13 gacatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttataca 81  Q
    |||| ||||||||||||||||||  |||| || |||||||||| |||||| |||||| |||||| ||||    
T  1101801 gacaccaaaatacaaacacaaattagacatcatacactgttcatcgtata-ttatacagtatttgtaca 1101734  T

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Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 130 - 433
Target Start/End: Original strand, 5370525 - 5370828
Alignment:
Q  130 cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgccgtctctctacaaccaccgccgtctaagctctcacctacaactgcttt 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  5370525 cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgctgtctctctacaaccaccgccgtctaagctctcacctaccactgcttt 5370624  T
Q  230 ctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttccgcttctgcaaacgacctgcaactctcagattccgatcacca 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||      
T  5370625 ctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttcctcttctgcaaacgacctgcaactctcagattctgatcactg 5370724  T
Q  330 actgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccacttctactgtcaccac 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5370725 actgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccacttctgctgtcaccac 5370824  T
Q  430 caaa 433  Q
    ||||    
T  5370825 caaa 5370828  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 5370406 - 5370492
Alignment:
Q  14 acatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatacatcagtgttccttcttcttc 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5370406 acatcaaaatacaaacacaaatttgacaccaaacactgttcaccgtatatttatacggtatttatatatcagtgttccttcttcttc 5370492  T

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Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 46697262 - 46697191
Alignment:
Q  13 gacatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatacatca 84  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46697262 gacatcaaaatacaaacacaaatttgacaccaaacactgttcaccgtatatttatacggtatttatacatca 46697191  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 46697047 - 46697010
Alignment:
Q  235 tcttctccgatcagcttagatctgaccaccaccaacaa 272  Q
    |||||||||||||||| |||||||||||||||||||||    
T  46697047 tcttctccgatcagctcagatctgaccaccaccaacaa 46697010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 23885849 - 23885914
Alignment:
Q  13 gacatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttat 78  Q
    |||||||||||||||||||||||  |||| ||||||||||| || |||||||||||| ||||||||    
T  23885849 gacatcaaaatacaaacacaaattagacatcaaacactgtttacagtatatttatacagtatttat 23885914  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 56398536 - 56398469
Alignment:
Q  13 gacatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttataca 81  Q
    |||||||||||||||||||||||  |||| ||||||||||||| |||||| |||||| |||||| ||||    
T  56398536 gacatcaaaatacaaacacaaattagacatcaaacactgttcatcgtata-ttatacagtatttgtaca 56398469  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 6284577 - 6284650
Alignment:
Q  13 gacatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatacatcagt 86  Q
    |||||||||||||||||||||||  |||| |||||| | ||||  |||| ||||||||||||| ||| ||||||    
T  6284577 gacatcaaaatacaaacacaaattagacatcaaacattattcatagtatctttatacggtattcatatatcagt 6284650  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 37606069 - 37606037
Alignment:
Q  21 aatacaaacacaaatatgacaccaaacactgtt 53  Q
    |||||||||||||||||||||||| ||||||||    
T  37606069 aatacaaacacaaatatgacaccatacactgtt 37606037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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