View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7581_low_4 (Length: 397)
Name: NF7581_low_4
Description: NF7581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7581_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 42529911 - 42529527
Alignment:
| Q |
1 |
agtgagatgaaacccaaaactttaatcaaattatcacaaaggtatcaacatgtcaaccacacccatgaccataatactactcatatatagctcaataatg |
100 |
Q |
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| T |
42529911 |
agtgagatgaaacccaaaactttaatcaaattatcacaaaggtatcaacatgtcaaccacacccatgaccataatactactcatatatagctcaataatg |
42529812 |
T |
|
| Q |
101 |
aaacccctataaattagctggaataatagctgcgagtagcagaatatataatcaaaagaaatgtctaatcagttaattcatatcatttaggggtgtgggg |
200 |
Q |
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| T |
42529811 |
aaacccctataaattagctggaataatagctgcaagtagcagaatatataatcgaaagaaatgtctaatcagttaattcatatcatttaggggtgtgggg |
42529712 |
T |
|
| Q |
201 |
aagtgatgttaatcaaccagtaatagttatggcagcagatggagaatgtatgaacatgtagatgataaattaactgtcaataactagaagctagttgaaa |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42529711 |
aagtgatgttgatcaaccagtaatagttatggcagcagatggagaatgtatgaacatgtagatgataaattaactgtcaataactagaagctagttgaaa |
42529612 |
T |
|
| Q |
301 |
tactgctagaacatataattggttcaaattggaaggtatggaggcgtgctaattctataacaatgggctggaggtttgatgtcca |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42529611 |
tactgctagaacatataattggttcaaattggaaggtatggaggcgtgctaattctataacaatgggctagaggtttgatgtcca |
42529527 |
T |
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