View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7581_low_5 (Length: 375)
Name: NF7581_low_5
Description: NF7581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7581_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 71 - 356
Target Start/End: Complemental strand, 20553089 - 20552804
Alignment:
| Q |
71 |
ttatatatagaaataaccatgtgcaattaaatgcacaatacggccaaaggataaagtaaaatacaaaactaaagatagagaacactaaagaagtagctaa |
170 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20553089 |
ttatgtatagaaataaccatgtacaattaaatgcacaatacggccaaaggataaagtaaaatacaaaactaaagatagagaacactaaagaagtagctaa |
20552990 |
T |
|
| Q |
171 |
tcaattttaaatgaaacaactgaaataaatcacgttataagctaaataaattaatcaacatggcaaaacgcaaaagttttttactaagtaagatagatga |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20552989 |
tcaattttaaatgaaacaactgaaataaatcacgttataagctaaataaattaatcaacatggagaaacgcaaaagttttttactaagtaagatagatga |
20552890 |
T |
|
| Q |
271 |
taaaatatgattatttccattaatgcagcttcaaacactgcaattccccaagcctccaaaaaatattggagaataagtcaaactaa |
356 |
Q |
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| T |
20552889 |
taaaataggattatttccattaatgcagcttcaaacactgcaattccccaagcctccaaaaaacattggagaataagtcaaactaa |
20552804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 71 - 356
Target Start/End: Complemental strand, 20559591 - 20559306
Alignment:
| Q |
71 |
ttatatatagaaataaccatgtgcaattaaatgcacaatacggccaaaggataaagtaaaatacaaaactaaagatagagaacactaaagaagtagctaa |
170 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
20559591 |
ttatgtatagaaataaccatgtacaattaaatgcacaatacggccaaaagataaagtaaaatacaaaactaaagataaagaatactaaagaagtagctaa |
20559492 |
T |
|
| Q |
171 |
tcaattttaaatgaaacaactgaaataaatcacgttataagctaaataaattaatcaacatggcaaaacgcaaaagttttttactaagtaagatagatga |
270 |
Q |
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| T |
20559491 |
tcaattttaaatgagacaactgaaataaatcacgttataagctaaattaattaattaacatggcaaaacgcaaaagttttttactaagtaagatagatga |
20559392 |
T |
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| Q |
271 |
taaaatatgattatttccattaatgcagcttcaaacactgcaattccccaagcctccaaaaaatattggagaataagtcaaactaa |
356 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
20559391 |
taaaataggattatttccattaatgcagcttcaaacactgcaattcccgaagcctccaaaaaacattggagaataagtcaaactaa |
20559306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 71 - 356
Target Start/End: Complemental strand, 20571153 - 20570868
Alignment:
| Q |
71 |
ttatatatagaaataaccatgtgcaattaaatgcacaatacggccaaaggataaagtaaaatacaaaactaaagatagagaacactaaagaagtagctaa |
170 |
Q |
| |
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|||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
20571153 |
ttatgtatagaaataaccatgtacaattaaatgcacaatacggccaaaagataaagtaaaatacaaaactaaagataaagaatactaaagaagtagctaa |
20571054 |
T |
|
| Q |
171 |
tcaattttaaatgaaacaactgaaataaatcacgttataagctaaataaattaatcaacatggcaaaacgcaaaagttttttactaagtaagatagatga |
270 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20571053 |
tcaattttaaatgagacaactgaaataaatcacgttataagctaaattaattaattaacatggcaaaacgcaaaagttttttactaagtaagatagatga |
20570954 |
T |
|
| Q |
271 |
taaaatatgattatttccattaatgcagcttcaaacactgcaattccccaagcctccaaaaaatattggagaataagtcaaactaa |
356 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
20570953 |
taaaataggattatttccattaatgcagcttcaaacactgcaattcccgaagcctccaaaaaacattggagaataagtcaaactaa |
20570868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 20553157 - 20553107
Alignment:
| Q |
1 |
ttgccgttgtatgctattaacttgaaagaattataccactattgtaaagcc |
51 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||| ||||||| |
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| T |
20553157 |
ttgccgttgtatgctattaacttgaaagaattatacctcaattataaagcc |
20553107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 20559660 - 20559624
Alignment:
| Q |
1 |
ttgccgttgtatgctattaacttgaaagaattatacc |
37 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
20559660 |
ttgccgttgtatgctattaacttgaaagaattatacc |
20559624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 20571222 - 20571186
Alignment:
| Q |
1 |
ttgccgttgtatgctattaacttgaaagaattatacc |
37 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
20571222 |
ttgccgttgtatgctattaacttgaaagaattatacc |
20571186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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