View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7581_low_8 (Length: 285)
Name: NF7581_low_8
Description: NF7581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7581_low_8 |
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| [»] chr8 (3 HSPs) |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 3056442 - 3056726
Alignment:
| Q |
1 |
tcactcatcacaagaacttggttcgtttacttggattttgcgggagtggaagtgaaagattgcttgtttatgagtacatgagcaatagcactttggcaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3056442 |
tcactcatcacaagaacttggttcgtttacttggattttgcgggagtggaagtgaaagattgcttgtttatgagtacatgagcaatagcactttggcaag |
3056541 |
T |
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| Q |
101 |
ttttcttttcaatgaagaaaaacagaagccaaattggaaactaaggctagaacttgcaataggaatagctagaggacttgtgtatttacatgaagagtgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3056542 |
ttttcttttcaatgaagaaaaacagaagccaaattggaaactaaggctagaacttgcaataggaatagctagaggacttgtgtatttacatgaagagtgc |
3056641 |
T |
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| Q |
201 |
atcactaggattatccattgtgacataaagcctcaaaacatactcctggatgattatttcgatgcaagaatttctgattttggat |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3056642 |
atcactaggattatccattgtgacataaagcctcaaaacatactcctggatgattatttcaatgcaagaatttctgattttggat |
3056726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 3035574 - 3035858
Alignment:
| Q |
1 |
tcactcatcacaagaacttggttcgtttacttggattttgcgggagtggaagtgaaagattgcttgtttatgagtacatgagcaatagcactttggcaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3035574 |
tcactcatcacaagaacttggttcgtttacttggattttgtgagagtggaagtgaaagactgcttgtttatgagtacatgagcaatagcactttggcaag |
3035673 |
T |
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| Q |
101 |
ttttcttttcaatgaagaaaaacagaagccaaattggaaactaaggctagaacttgcaataggaatagctagaggacttgtgtatttacatgaagagtgc |
200 |
Q |
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| T |
3035674 |
ttttcttttcaatgaagaaaaacagaagccaaattggaaactaaggctagaacttgcaataggaatagctagaggacttgtgtatttacatgaagagtgc |
3035773 |
T |
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| Q |
201 |
atcactaggattatccattgtgacataaagcctcaaaacatactcctggatgattatttcgatgcaagaatttctgattttggat |
285 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||| |
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| T |
3035774 |
atcactaggatcattcattgtgacataaagcctcaaaacatactccttgatgattacttcaatgcaagaatttctgattttggat |
3035858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 3070476 - 3070186
Alignment:
| Q |
1 |
tcactcatcacaagaacttggttcgtttacttggattttgcgggagtggaagtgaaagattgcttgtttatgagtacatgagcaatagcactttggcaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | | || |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3070476 |
tcactcatcacaagaacttggttcgtttacttggattttgtgagtgtagaagtgaaagattgcttgtttatgagtacatgagcaatggcactttggcaag |
3070377 |
T |
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| Q |
101 |
ttttcttttcaatg------aagaaaaacagaagccaaattggaaactaaggctagaacttgcaataggaatagctagaggacttgtgtatttacatgaa |
194 |
Q |
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|||||||||||||| | || ||||| || |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3070376 |
ttttcttttcaatgctgatgatgagaaacaaaaaccaagttggaaactaaggctagaacttgcaataggtatagctagaggacttgtgtatttacatgaa |
3070277 |
T |
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| Q |
195 |
gagtgcatcactaggattatccattgtgacataaagcctcaaaacatactcctggatgattatttcgatgcaagaatttctgattttggat |
285 |
Q |
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| T |
3070276 |
gagtgcatcactaggatcatccattgtgacataaagcctcagaacatactccttgatgattacttcaatgcaagaatttctgattttggat |
3070186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 129 - 285
Target Start/End: Original strand, 21457475 - 21457635
Alignment:
| Q |
129 |
ccaaattggaaactaaggctagaacttgcaataggaatagctagaggacttgtgtatttacatgaagagtgcatcactaggattatcca-----ttgtga |
223 |
Q |
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||||||||||||||||| || ||| ||||||||| |||||||||| ||| || | |||||||||||||| ||||| |||||| ||| | |||||| |
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| T |
21457475 |
ccaaattggaaactaagacttgaaaatgcaatagggatagctagagtactggtat-tttacatgaagagtccatcaataggatcatctattgacttgtga |
21457573 |
T |
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| Q |
224 |
cataaagcctcaaaacatactcctggatgattatttcgatgcaagaatttctgattttggat |
285 |
Q |
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| T |
21457574 |
cataaagcctcaaaacatacccattgatgattacttcaatgcaagaatttctgactttggat |
21457635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 28437989 - 28438030
Alignment:
| Q |
213 |
atccattgtgacataaagcctcaaaacatactcctggatgat |
254 |
Q |
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| T |
28437989 |
atccattgtgacataaagccacaaaacatacttctagatgat |
28438030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 28445438 - 28445510
Alignment:
| Q |
213 |
atccattgtgacataaagcctcaaaacatactcctggatgattatttcgatgcaagaatttctgattttggat |
285 |
Q |
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|||||||| || |||||||| ||||| ||||| || |||||| | | | ||||||||||||| |||||||||| |
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| T |
28445438 |
atccattgcgatataaagccacaaaatatacttctagatgatcaatacaatgcaagaatttcagattttggat |
28445510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 28466284 - 28466356
Alignment:
| Q |
213 |
atccattgtgacataaagcctcaaaacatactcctggatgattatttcgatgcaagaatttctgattttggat |
285 |
Q |
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||||||||||| |||||||| ||||| ||||| || |||||| | | | ||||||| ||||| |||||||||| |
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| T |
28466284 |
atccattgtgatataaagccacaaaatatacttctagatgatcaatacaatgcaaggatttcagattttggat |
28466356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 28488045 - 28488117
Alignment:
| Q |
213 |
atccattgtgacataaagcctcaaaacatactcctggatgattatttcgatgcaagaatttctgattttggat |
285 |
Q |
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||||||||||| |||||||| ||||| ||||| || |||||| | | | ||||||| ||||| |||||||||| |
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| T |
28488045 |
atccattgtgatataaagccacaaaatatacttctagatgatcaatacaatgcaaggatttcagattttggat |
28488117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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