View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7582_high_1 (Length: 910)

Name: NF7582_high_1
Description: NF7582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7582_high_1
NF7582_high_1
[»] chr1 (6 HSPs)
chr1 (19-910)||(15452292-15453184)
chr1 (319-409)||(46577370-46577460)
chr1 (728-772)||(18325187-18325231)
chr1 (728-775)||(32088669-32088716)
chr1 (661-772)||(41516932-41517043)
chr1 (726-772)||(28083982-28084028)
[»] chr7 (8 HSPs)
chr7 (669-795)||(45369084-45369210)
chr7 (662-772)||(21436029-21436140)
chr7 (693-765)||(7087353-7087425)
chr7 (727-774)||(12306920-12306967)
chr7 (727-773)||(48290335-48290381)
chr7 (727-772)||(12306679-12306724)
chr7 (727-772)||(45004965-45005010)
chr7 (730-775)||(48158833-48158878)
[»] chr5 (7 HSPs)
chr5 (702-772)||(29922839-29922909)
chr5 (733-772)||(12208944-12208983)
chr5 (727-774)||(38045392-38045439)
chr5 (727-772)||(1105384-1105429)
chr5 (683-772)||(13224670-13224758)
chr5 (702-772)||(10898667-10898737)
chr5 (702-767)||(29922576-29922641)
[»] chr4 (5 HSPs)
chr4 (702-772)||(25318992-25319062)
chr4 (708-771)||(33560647-33560710)
chr4 (681-766)||(2171738-2171823)
chr4 (734-771)||(24338547-24338584)
chr4 (727-772)||(41058871-41058916)
[»] chr2 (7 HSPs)
chr2 (693-775)||(33502910-33502992)
chr2 (730-794)||(6925630-6925694)
chr2 (728-767)||(39702528-39702567)
chr2 (727-769)||(4908737-4908779)
chr2 (727-777)||(17505252-17505302)
chr2 (661-718)||(6767673-6767730)
chr2 (727-772)||(11510898-11510943)
[»] chr8 (5 HSPs)
chr8 (733-772)||(13929808-13929847)
chr8 (727-778)||(41614783-41614834)
chr8 (709-775)||(4554276-4554342)
chr8 (728-778)||(11038121-11038171)
chr8 (727-765)||(36447965-36448003)
[»] chr3 (2 HSPs)
chr3 (726-773)||(43987646-43987693)
chr3 (728-774)||(2410026-2410072)
[»] scaffold0393 (1 HSPs)
scaffold0393 (693-767)||(12368-12442)
[»] chr6 (6 HSPs)
chr6 (694-772)||(31812254-31812332)
chr6 (723-772)||(19260974-19261023)
chr6 (663-774)||(6214797-6214907)
chr6 (728-772)||(7263016-7263060)
chr6 (659-775)||(29240479-29240595)
chr6 (715-772)||(26550464-26550521)


Alignment Details
Target: chr1 (Bit Score: 819; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 819; E-Value: 0
Query Start/End: Original strand, 19 - 910
Target Start/End: Complemental strand, 15453184 - 15452292
Alignment:
Q  19 gtggttagctctgctgtgaatgtgaggtcttccggcgatattcaaacgttgacggctgctgctgcgacaggtatgcggcgacataatttatctttttatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15453184 gtggttagctctgctgtgaatgtgaggtcttccggcgatattcaaacgttgacggctgctgctgcgacaggtatgcggcgacataatttatctttttatt 15453085  T
Q  119 tgtgattgtttatatgagattaatcataaaaatgatttattcagaagaatagtttaacttaaatgtgttaaattattagctttttcagtctcattggaat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15453084 tgtgattgtttatatgagattaatcataaaaatgatttattcagaagaatagtttaacttaaatgtgttaaattattaactttttcagtctcattggaat 15452985  T
Q  219 gttggttaaattgattatttcatgaaaatgactggcttaaatgnnnnnnnnnnnnnncatatagttgttaattaatttatggtgtttgtggtttgaaatc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||              |||||||||||| ||||||||||||||||||||||||||||||    
T  15452984 gttggttaaattgattatttcatgaaaatgactggcttaaatgaaaaaaggaaaaaacatatagttgttgattaatttatggtgtttgtggtttgaaatc 15452885  T
Q  319 gtagcattgcgtggggctgcaacattgaaagcaagggcccttaaagaagtttggagtattgctgctgtaattcctgtggagaagaatttggtaggtaatg 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15452884 gtagcattgcgtggggctgcaacattgaaagcaagggcccttaaagaagtttggagtattgctgctgtaattcctgtggagaagaatttggtaggtaatg 15452785  T
Q  419 gtaatggtggtgggggcagtggtagtaatggcagctccaatagtagcttcagtggtgaacttgcacctgaagaaaatttcttgggcatttgtagtagaga 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15452784 gtaatggtggtgggggcagtggtagtaatggcagctccaatagtagcttcagtggtgaacttgcacctgaagaaaatttcttgggcatttgtagtagaga 15452685  T
Q  519 attgctagccagaggttgcgagcttctcaaacgcactcgcacaggtacattttctcgaattaattgatttagtaaaattggttatatttaaaagtgaact 618  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15452684 attgctagccagaggtttcgagcttctcaaacgcactcgcacaggtacattttctcgaattaattgatttagtaaaattggttatatttaaaagtgaact 15452585  T
Q  619 gaatgtaaagtggtttaaagtggtttggaccctaagcacaaggctaaaattcaattatagatgcaaaagttccgaattctagtttcaaattagaagcaat 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15452584 gaatgtaaagtggtttaaagtggtttggaccctaagcacaaggctaaaattcaattatagatgcaaaagttccgaattctagtttcaaattagaagcaat 15452485  T
Q  719 tcttgatacaaaatcaattctactcgagaacatccaaagatgtcaaaatcaattttatacatgtgaaatcagttttgcttctttcaatggtggaaccaat 818  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15452484 tcttgatacaaaatcaattctactcgagaacatccaaagatgtcaaaatcaattttatacatgtgaaatcagttttgcttctttcaatggtggaaccaat 15452385  T
Q  819 tattgacttgagtctatgaagcattgacacttaaaaatttaaagtatgtttggtgtccgacatttatcattgatgtc-catctcattgcattc 910  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  ||||||||||||||    
T  15452384 tattgacttgagtctatgaagcattgacacttaaaaatttaaagtatgtttggtgtccgacatttatcattgtcgtcatatctcattgcattc 15452292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 319 - 409
Target Start/End: Complemental strand, 46577460 - 46577370
Alignment:
Q  319 gtagcattgcgtggggctgcaacattgaaagcaagggcccttaaagaagtttggagtattgctgctgtaattcctgtggagaagaatttgg 409  Q
    ||||| |||||||||||||||||||||||||| |||||  | ||||||||||||| |||||| || || |||||||||||||  |||||||    
T  46577460 gtagctttgcgtggggctgcaacattgaaagcgagggcattgaaagaagtttggaatattgcagcagtgattcctgtggagagaaatttgg 46577370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 728 - 772
Target Start/End: Original strand, 18325187 - 18325231
Alignment:
Q  728 aaaatcaattctactcgagaacatccaaagatgtcaaaatcaatt 772  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||    
T  18325187 aaaatcaattctactcgagaaaatccaaacatgtcaaaatcaatt 18325231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 728 - 775
Target Start/End: Original strand, 32088669 - 32088716
Alignment:
Q  728 aaaatcaattctactcgagaacatccaaagatgtcaaaatcaatttta 775  Q
    ||||||||||||||| |||| || ||||| ||||||||||||||||||    
T  32088669 aaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatttta 32088716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 772
Target Start/End: Complemental strand, 41517043 - 41516932
Alignment:
Q  661 gctaaaattcaattatagatgcaaaagttccgaattctagtttcaaattagaagcaattcttgatacaaaatcaattctactcgagaacatccaaagatg 760  Q
    ||||||| ||||||  ||| ||||||  ||| |||||||  ||||| |||||| ||||| |  |  ||||||||||||||||||| ||||| | ||||||    
T  41517043 gctaaaaatcaattgaagaggcaaaaactccaaattctaacttcaagttagaatcaattttaaacgcaaaatcaattctactcgaaaacattccaagatg 41516944  T
Q  761 tcaaaatcaatt 772  Q
    ||| ||||||||    
T  41516943 tcataatcaatt 41516932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 726 - 772
Target Start/End: Original strand, 28083982 - 28084028
Alignment:
Q  726 acaaaatcaattctactcgagaacatccaaagatgtcaaaatcaatt 772  Q
    |||||||||||||||||||| |||| ||||| |||||| ||||||||    
T  28083982 acaaaatcaattctactcgaaaacaaccaaatatgtcagaatcaatt 28084028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 1e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 669 - 795
Target Start/End: Complemental strand, 45369210 - 45369084
Alignment:
Q  669 tcaattatagatgcaaaagttccgaattctagtttcaaattagaagcaattcttgatacaaaatcaattctactcgagaacatccaaagatgtcaaaatc 768  Q
    |||||| |||| ||||||| |||||||||||| ||||| ||| || ||||||| ||  |||||||||||||||| ||||||||||||| || ||||||||    
T  45369210 tcaattttagaggcaaaagctccgaattctagcttcaagttaaaatcaattctagaagcaaaatcaattctacttgagaacatccaaacatctcaaaatc 45369111  T
Q  769 aattttatacatgtgaaatcagttttg 795  Q
    || | || || | |||||||| |||||    
T  45369110 aaatctacacctctgaaatcaattttg 45369084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 662 - 772
Target Start/End: Original strand, 21436029 - 21436140
Alignment:
Q  662 ctaaaattcaattatagatgcaaaagttccgaa-ttctagtttcaaattagaagcaattcttgatacaaaatcaattctactcgagaacatccaaagatg 760  Q
    ||||||||||||  |||| ||||||| ||| || |||||| ||||| ||| || ||||||| ||   ||||| ||||||||||||||||||  ||| |||    
T  21436029 ctaaaattcaatggtagaggcaaaagctccaaaattctagcttcaagttaaaatcaattctcgaggtaaaataaattctactcgagaacattaaaacatg 21436128  T
Q  761 tcaaaatcaatt 772  Q
    ||||||||||||    
T  21436129 tcaaaatcaatt 21436140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 693 - 765
Target Start/End: Original strand, 7087353 - 7087425
Alignment:
Q  693 aattctagtttcaaattagaagcaattcttgatacaaaatcaattctactcgagaacatccaaagatgtcaaa 765  Q
    |||||||| ||||| ||| || |||||||  | |||||||||||||||||||| ||||| |||| ||||||||    
T  7087353 aattctagcttcaagttaaaaccaattctaaaaacaaaatcaattctactcgaaaacattcaaacatgtcaaa 7087425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 774
Target Start/End: Complemental strand, 12306967 - 12306920
Alignment:
Q  727 caaaatcaattctactcgagaacatccaaagatgtcaaaatcaatttt 774  Q
    ||||||||||||||||| ||| || ||||| |||||||||||||||||    
T  12306967 caaaatcaattctactcaagagcaaccaaacatgtcaaaatcaatttt 12306920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 727 - 773
Target Start/End: Complemental strand, 48290381 - 48290335
Alignment:
Q  727 caaaatcaattctactcgagaacatccaaagatgtcaaaatcaattt 773  Q
    ||||||||||||| || || |||||||||| ||||||||||||||||    
T  48290381 caaaatcaattctgcttgaaaacatccaaacatgtcaaaatcaattt 48290335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 727 - 772
Target Start/End: Complemental strand, 12306724 - 12306679
Alignment:
Q  727 caaaatcaattctactcgagaacatccaaagatgtcaaaatcaatt 772  Q
    |||||||||||||||| |||| || ||||| |||||||||||||||    
T  12306724 caaaatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 12306679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 727 - 772
Target Start/End: Complemental strand, 45005010 - 45004965
Alignment:
Q  727 caaaatcaattctactcgagaacatccaaagatgtcaaaatcaatt 772  Q
    |||||||||||||| |||||| || ||||| |||||||||||||||    
T  45005010 caaaatcaattctattcgagagcaaccaaacatgtcaaaatcaatt 45004965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 730 - 775
Target Start/End: Complemental strand, 48158878 - 48158833
Alignment:
Q  730 aatcaattctactcgagaacatccaaagatgtcaaaatcaatttta 775  Q
    |||||||| ||||||||| || ||||| ||||||||||||||||||    
T  48158878 aatcaattttactcgagagcaaccaaacatgtcaaaatcaatttta 48158833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 702 - 772
Target Start/End: Complemental strand, 29922909 - 29922839
Alignment:
Q  702 ttcaaattagaagcaattcttgatacaaaatcaattctactcgagaacatccaaagatgtcaaaatcaatt 772  Q
    ||||| ||| || |||||||||| |||||||||||||| |||||||||| ||||| |||||||||||||||    
T  29922909 ttcaagttaaaatcaattcttgagacaaaatcaattctgctcgagaacaaccaaacatgtcaaaatcaatt 29922839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 733 - 772
Target Start/End: Original strand, 12208944 - 12208983
Alignment:
Q  733 caattctactcgagaacatccaaagatgtcaaaatcaatt 772  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  12208944 caattctactcgagaacatccaaacatgtcaaaatcaatt 12208983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 727 - 774
Target Start/End: Complemental strand, 38045439 - 38045392
Alignment:
Q  727 caaaatcaattctactcgagaacatccaaagatgtcaaaatcaatttt 774  Q
    |||||||||||||||| |||||||| |||| |||||||||||||||||    
T  38045439 caaaatcaattctacttgagaacattcaaacatgtcaaaatcaatttt 38045392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 727 - 772
Target Start/End: Complemental strand, 1105429 - 1105384
Alignment:
Q  727 caaaatcaattctactcgagaacatccaaagatgtcaaaatcaatt 772  Q
    |||||||||||||||| ||||||| ||||| |||||||||||||||    
T  1105429 caaaatcaattctacttgagaacagccaaaaatgtcaaaatcaatt 1105384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 772
Target Start/End: Original strand, 13224670 - 13224758
Alignment:
Q  683 aaaagttccgaattctagtttcaaattagaagcaattcttgatacaaaatcaattctactcgagaacatccaaagatgtcaaaatcaatt 772  Q
    ||||| ||| |||||||| ||||| || |||  |||| | || |||||||||||| |||||| ||||||||||| |||||||||||||||    
T  13224670 aaaagctccaaattctagcttcaagtttgaatgaattatagaaacaaaatcaattatactcg-gaacatccaaacatgtcaaaatcaatt 13224758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 702 - 772
Target Start/End: Complemental strand, 10898737 - 10898667
Alignment:
Q  702 ttcaaattagaagcaattcttgatacaaaatcaattctactcgagaacatccaaagatgtcaaaatcaatt 772  Q
    ||||| |||||| ||||||| ||  ||||||||||| ||||||||| || ||||| |||||||||| ||||    
T  10898737 ttcaagttagaatcaattctagaggcaaaatcaattttactcgagagcaaccaaacatgtcaaaattaatt 10898667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 702 - 767
Target Start/End: Complemental strand, 29922641 - 29922576
Alignment:
Q  702 ttcaaattagaagcaattcttgatacaaaatcaattctactcgagaacatccaaagatgtcaaaat 767  Q
    ||||| ||| || ||||||||||  |||||||||||||||| |||||||  |||| ||||||||||    
T  29922641 ttcaagttaaaatcaattcttgaggcaaaatcaattctactagagaacaatcaaacatgtcaaaat 29922576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 702 - 772
Target Start/End: Complemental strand, 25319062 - 25318992
Alignment:
Q  702 ttcaaattagaagcaattcttgatacaaaatcaattctactcgagaacatccaaagatgtcaaaatcaatt 772  Q
    ||||| |||||| ||||||| || |||||||||||||||||||||| || ||||| |||||||||||||||    
T  25319062 ttcaagttagaatcaattctggagacaaaatcaattctactcgagagcaaccaaacatgtcaaaatcaatt 25318992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 708 - 771
Target Start/End: Original strand, 33560647 - 33560710
Alignment:
Q  708 ttagaagcaattcttgatacaaaatcaattctactcgagaacatccaaagatgtcaaaatcaat 771  Q
    |||||| ||||||| ||  ||||||||||||||||||||| || ||||| ||||||||||||||    
T  33560647 ttagaatcaattctagaggcaaaatcaattctactcgagagcaaccaaacatgtcaaaatcaat 33560710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 766
Target Start/End: Complemental strand, 2171823 - 2171738
Alignment:
Q  681 gcaaaagttccgaattctagtttcaaattagaagcaattcttgatacaaaatcaattctactcgagaacatccaaagatgtcaaaa 766  Q
    |||||||| || |||||||| ||||| || ||| ||||||  |   |||| |||||| |||||||||||||||||| |||||||||    
T  2171823 gcaaaagtcccaaattctagcttcaagttcgaatcaattccgggggcaaagtcaattttactcgagaacatccaaacatgtcaaaa 2171738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 734 - 771
Target Start/End: Complemental strand, 24338584 - 24338547
Alignment:
Q  734 aattctactcgagaacatccaaagatgtcaaaatcaat 771  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  24338584 aattttactcgagaacatccaaacatgtcaaaatcaat 24338547  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 727 - 772
Target Start/End: Complemental strand, 41058916 - 41058871
Alignment:
Q  727 caaaatcaattctactcgagaacatccaaagatgtcaaaatcaatt 772  Q
    ||||||||||| ||||||| |||||||||| |||||| ||||||||    
T  41058916 caaaatcaattttactcgaaaacatccaaacatgtcacaatcaatt 41058871  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 693 - 775
Target Start/End: Original strand, 33502910 - 33502992
Alignment:
Q  693 aattctagtttcaaattagaagcaattcttgatacaaaatcaattctactcgagaacatccaaagatgtcaaaatcaatttta 775  Q
    |||||||| ||||| |||||| ||||||| ||| |||||||| || ||||||||| || ||||| ||||||||||||||||||    
T  33502910 aattctagcttcaagttagaatcaattctggatgcaaaatcagttttactcgagagcaaccaaacatgtcaaaatcaatttta 33502992  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 730 - 794
Target Start/End: Complemental strand, 6925694 - 6925630
Alignment:
Q  730 aatcaattctactcgagaacatccaaagatgtcaaaatcaattttatacatgtgaaatcagtttt 794  Q
    |||||||||||||| |||| || |||| |||||||||| |||||||||||| | |||||| ||||    
T  6925694 aatcaattctactcaagaatatacaaacatgtcaaaattaattttatacattttaaatcaatttt 6925630  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 728 - 767
Target Start/End: Original strand, 39702528 - 39702567
Alignment:
Q  728 aaaatcaattctactcgagaacatccaaagatgtcaaaat 767  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  39702528 aaaatcaattctactcgagaacatacaaacatgtcaaaat 39702567  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 727 - 769
Target Start/End: Complemental strand, 4908779 - 4908737
Alignment:
Q  727 caaaatcaattctactcgagaacatccaaagatgtcaaaatca 769  Q
    ||||||||||||||||||| ||||| |||| ||||||||||||    
T  4908779 caaaatcaattctactcgaaaacatacaaacatgtcaaaatca 4908737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 727 - 777
Target Start/End: Original strand, 17505252 - 17505302
Alignment:
Q  727 caaaatcaattctactcgagaacatccaaagatgtcaaaatcaattttata 777  Q
    ||||||||||||||||| |||||||| ||| ||| ||||| ||||||||||    
T  17505252 caaaatcaattctactcaagaacatcaaaacatgacaaaaccaattttata 17505302  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 661 - 718
Target Start/End: Complemental strand, 6767730 - 6767673
Alignment:
Q  661 gctaaaattcaattatagatgcaaaagttccgaattctagtttcaaattagaagcaat 718  Q
    |||||||||||||| |||| ||||||| ||| |||||||| ||||| |||||| ||||    
T  6767730 gctaaaattcaattgtagaagcaaaagctccaaattctagcttcaagttagaatcaat 6767673  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 727 - 772
Target Start/End: Complemental strand, 11510943 - 11510898
Alignment:
Q  727 caaaatcaattctactcgagaacatccaaagatgtcaaaatcaatt 772  Q
    ||||||||||||||||||| |||||||||| || |||||| |||||    
T  11510943 caaaatcaattctactcgaaaacatccaaacatatcaaaaccaatt 11510898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 733 - 772
Target Start/End: Original strand, 13929808 - 13929847
Alignment:
Q  733 caattctactcgagaacatccaaagatgtcaaaatcaatt 772  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  13929808 caattctactcgagaacatccaaacatgtcaaaatcaatt 13929847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 778
Target Start/End: Complemental strand, 41614834 - 41614783
Alignment:
Q  727 caaaatcaattctactcgagaacatccaaagatgtcaaaatcaattttatac 778  Q
    |||||||||||||||| || | |||||||| | |||||||||||||||||||    
T  41614834 caaaatcaattctacttgaaaccatccaaacaagtcaaaatcaattttatac 41614783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 709 - 775
Target Start/End: Complemental strand, 4554342 - 4554276
Alignment:
Q  709 tagaagcaattcttgatacaaaatcaattctactcgagaacatccaaagatgtcaaaatcaatttta 775  Q
    ||||| |||||||||| |||||||||||| |||| |||| || | |||  |||||||||||||||||    
T  4554342 tagaatcaattcttgagacaaaatcaattatactagagagcaactaaatgtgtcaaaatcaatttta 4554276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 728 - 778
Target Start/End: Complemental strand, 11038171 - 11038121
Alignment:
Q  728 aaaatcaattctactcgagaacatccaaagatgtcaaaatcaattttatac 778  Q
    |||||||| || | ||||||||||||||| ||||||||||||||| |||||    
T  11038171 aaaatcaactccattcgagaacatccaaacatgtcaaaatcaattatatac 11038121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 727 - 765
Target Start/End: Original strand, 36447965 - 36448003
Alignment:
Q  727 caaaatcaattctactcgagaacatccaaagatgtcaaa 765  Q
    ||||||||||||||| |||||||||||||| ||||||||    
T  36447965 caaaatcaattctacccgagaacatccaaacatgtcaaa 36448003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 726 - 773
Target Start/End: Original strand, 43987646 - 43987693
Alignment:
Q  726 acaaaatcaattctactcgagaacatccaaagatgtcaaaatcaattt 773  Q
    |||||||||||| ||||| |||||||||||| ||||||||||||||||    
T  43987646 acaaaatcaattgtactcaagaacatccaaacatgtcaaaatcaattt 43987693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 728 - 774
Target Start/End: Original strand, 2410026 - 2410072
Alignment:
Q  728 aaaatcaattctactcgagaacatccaaagatgtcaaaatcaatttt 774  Q
    ||||||||||||||| ||||||||||||| |||||||||| ||||||    
T  2410026 aaaatcaattctacttgagaacatccaaacatgtcaaaataaatttt 2410072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 693 - 767
Target Start/End: Original strand, 12368 - 12442
Alignment:
Q  693 aattctagtttcaaattagaagcaattcttgatacaaaatcaattctactcgagaacatccaaagatgtcaaaat 767  Q
    |||| ||| ||||| |||||| || |||| ||  |||||||||||||||| ||||||||||||| ||||||||||    
T  12368 aattgtagcttcaagttagaatcatttctggaggcaaaatcaattctacttgagaacatccaaacatgtcaaaat 12442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 694 - 772
Target Start/End: Complemental strand, 31812332 - 31812254
Alignment:
Q  694 attctagtttcaaattagaagcaattcttgatacaaaatcaattctactcgagaacatccaaagatgtcaaaatcaatt 772  Q
    ||||||| ||||| | |||| |||||||  ||||||||| ||||||||||||  ||| ||||| |||||||||||||||    
T  31812332 attctagcttcaagtcagaatcaattctacatacaaaataaattctactcgactacaaccaaacatgtcaaaatcaatt 31812254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 723 - 772
Target Start/End: Original strand, 19260974 - 19261023
Alignment:
Q  723 gatacaaaatcaattctactcgagaacatccaaagatgtcaaaatcaatt 772  Q
    ||||| ||||||||||  |||||||||||||||| |||||||||||||||    
T  19260974 gataccaaatcaattcatctcgagaacatccaaacatgtcaaaatcaatt 19261023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 663 - 774
Target Start/End: Original strand, 6214797 - 6214907
Alignment:
Q  663 taaaattcaattatagatgcaaaagttccgaattctagtttcaaattagaagcaattcttgatacaa-aatcaattctactcgagaacatccaaagatgt 761  Q
    ||||| ||| || |||| ||||||||||| || ||||| ||||| |||||| | ||||| || |||| |||| |||||| ||||||| ||||||| ||||    
T  6214797 taaaaatcagttgtagaggcaaaagttccaaactctagcttcaagttagaatcgattctgga-acaagaatcgattcta-tcgagaaaatccaaacatgt 6214894  T
Q  762 caaaatcaatttt 774  Q
    |||||||||||||    
T  6214895 caaaatcaatttt 6214907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 728 - 772
Target Start/End: Complemental strand, 7263060 - 7263016
Alignment:
Q  728 aaaatcaattctactcgagaacatccaaagatgtcaaaatcaatt 772  Q
    |||||||||| ||||||||||||||| || |||||||||||||||    
T  7263060 aaaatcaattatactcgagaacatcctaaaatgtcaaaatcaatt 7263016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 659 - 775
Target Start/End: Original strand, 29240479 - 29240595
Alignment:
Q  659 aggctaaaattcaattatagatgcaaaagttccgaattctagtttcaaattagaagcaattcttgatacaaaatcaattctactcgagaacatccaaaga 758  Q
    |||||||||||||||| |||  ||||||  | | |||| ||| ||||| |||||| ||| ||| ||   ||||||||||||||| || || |||| || |    
T  29240479 aggctaaaattcaattgtaggggcaaaaacttcaaattttagcttcaagttagaatcaactctggaggtaaaatcaattctacttgaaaatatcctaaca 29240578  T
Q  759 tgtcaaaatcaatttta 775  Q
    |||||||||||||||||    
T  29240579 tgtcaaaatcaatttta 29240595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 715 - 772
Target Start/End: Complemental strand, 26550521 - 26550464
Alignment:
Q  715 caattcttgatacaaaatcaattctactcgagaacatccaaagatgtcaaaatcaatt 772  Q
    ||||||| || ||||||||||||||| | ||| ||| ||||| |||||||||||||||    
T  26550521 caattctagagacaaaatcaattctagttgagtacaaccaaacatgtcaaaatcaatt 26550464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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