View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7582_high_12 (Length: 228)
Name: NF7582_high_12
Description: NF7582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7582_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 55735455 - 55735676
Alignment:
| Q |
1 |
caaacaaaatcttagtcgctttgaaaaaatatttacttcgatcaaatttaagtcatgagaaaaatatttactttggtcaaactcaaatattgtagnnnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
55735455 |
caaacaaaatcttagtcgctttgaaaaaatatttacttcgatcaaatttaagtcatgaggaaaatatttactttggtcaaactcaaatattgtagaaaaa |
55735554 |
T |
|
| Q |
101 |
nnnnnnnntaattgggaagcaaatttggccactccttcccctggcccttgcacatgaaaaatgagaaataaaaggccaacactcaaccttaccaatcatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
55735555 |
aataaaaataattgggaagcaaatttggccactccttcccctggcccttgcacatgaaaaatgagaaataaaaggccaacactcaaccttaacaatcatt |
55735654 |
T |
|
| Q |
201 |
cctcttctctgcaactgcaaat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
55735655 |
cctcttctctgcaactgcaaat |
55735676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University