View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7582_high_7 (Length: 280)
Name: NF7582_high_7
Description: NF7582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7582_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 43530548 - 43530304
Alignment:
| Q |
18 |
caccccaaaactatacacatcgctcgccgaagtaggcgctgcaaccgtcgctatctccggcgccaaataccctaaagtccccaccacacgtgtggtatta |
117 |
Q |
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| T |
43530548 |
caccccaaaactatacacatcgctcgccgaagtaggcgctgcaaccgtcgctatctccggcgccaaataccctaaagtccccaccacacgtgtggtatta |
43530449 |
T |
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| Q |
118 |
ggaacttgcccatgttggtaaagcttagccaaaccaaaatctcccaatcttcctctcatatcaccatccaacaaaatgttactagatttaatatccctat |
217 |
Q |
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| T |
43530448 |
ggaacttgcccatgttggtaaagcttagccaaaccaaaatctcccaatcttcctctcatatcaccatccaacaaaatgttactagatttaatatccctat |
43530349 |
T |
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| Q |
218 |
gaataacaacctggtcccaaccatgatgaaggtagctaagccctt |
262 |
Q |
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| T |
43530348 |
gaataacaacctggtcccaaccatgatgaaggtagctaagccctt |
43530304 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 51820949 - 51820988
Alignment:
| Q |
182 |
catccaacaaaatgttactagatttaatatccctatgaat |
221 |
Q |
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| T |
51820949 |
catctaacaaaatgttactagatttaacatccctatgaat |
51820988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 22912719 - 22912807
Alignment:
| Q |
148 |
aaaccaaaatctcccaatcttcctctcatatcaccatccaacaaaatgttactagatttaatatccctatgaataacaacctggtccca |
236 |
Q |
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| T |
22912719 |
aaaccaaaatcacctaatctaccattcatttcaccatctaataaaacattactagctttaatgtctctatgaataacaacttgttccca |
22912807 |
T |
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