View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7582_high_8 (Length: 271)
Name: NF7582_high_8
Description: NF7582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7582_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 263
Target Start/End: Complemental strand, 36135356 - 36135089
Alignment:
| Q |
10 |
caaagtgagcataaaccactcaattggttgaaagatatgtcaattacaaatttttcaaccaaacacttaatgatcttcacttgccattgaacaagaagaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36135356 |
caaagtgagcataaaccactcaattggttgaaagatatgtcaattacaaatttttcaaccaaacacttaatgatcttcacttgccattgaacaagaagaa |
36135257 |
T |
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| Q |
110 |
gaaacacgcgaaggttgagcaatatttttatcaattacttaaacaacttttgtatttggac--------------tatatacacacacattattttctct |
195 |
Q |
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||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
36135256 |
gaaacacgcgaaggttgagaaatacttttatcaattacttaaacaacttttatatttggacactcataaattctatatatacacacacattattttctct |
36135157 |
T |
|
| Q |
196 |
ttatctttgtttccattatattattaacatatcacatttatcacatcactctatctatttttcttctc |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36135156 |
ttatctttgtttccattatattattaacatatcacatttatcacatcactctatctatttttcttctc |
36135089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 10 - 142
Target Start/End: Complemental strand, 41336789 - 41336660
Alignment:
| Q |
10 |
caaagtgagcataaaccactcaattggttgaaagatatgtcaattacaaatttttcaaccaaacacttaatgatcttcacttgccattgaacaagaagaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||| || || |
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| T |
41336789 |
caaagtgagcataaaccactcaattggttgaaagatatgtcaattacaaatttttcaaccaagcacttaatgatcttcacctggcattgaac---aacaa |
41336693 |
T |
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| Q |
110 |
gaaacacgcgaaggttgagcaatatttttatca |
142 |
Q |
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| T |
41336692 |
aaaacacgcgaaggttgaaaaatatttttatca |
41336660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 6463213 - 6463169
Alignment:
| Q |
199 |
tctttgtttccattatattattaacatatcacatttatcacatca |
243 |
Q |
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||||| || |||||| || |||||||||||||||||||||||||| |
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| T |
6463213 |
tcttttttcccattacatcattaacatatcacatttatcacatca |
6463169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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