View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7582_low_12 (Length: 264)
Name: NF7582_low_12
Description: NF7582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7582_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 36135512 - 36135749
Alignment:
| Q |
8 |
ttggtgttaccatgagagtcgtctcttgggttctaagagcggactcttttcaacttatgtgttggaaattttagtcctctacatatttaatctttacaac |
107 |
Q |
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| T |
36135512 |
ttggtgttaccatgagagtcgtctcttgggttctaagagtggactcttttcaacttatgtgttggaaattttagtcctctacatatttaatctttacaac |
36135611 |
T |
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| Q |
108 |
aatgaatttgttggaccatttgaggtgacaaacttgattattttgatgtatatattaacattaatatggcttatgaagaataagaaaattaaatttatgt |
207 |
Q |
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| T |
36135612 |
aatgaatttgttggaccatttgaggtgacaaacttgattattttgatgtatatattaacattaatatggcttatgaagaataagaaaattaaatttatgt |
36135711 |
T |
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| Q |
208 |
tattttgatcctattgttatgcatatatgattgagttg |
245 |
Q |
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| T |
36135712 |
tattttgatcctattgttatgcatatatgattgagttg |
36135749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 41336944 - 41337161
Alignment:
| Q |
8 |
ttggtgttaccatgagagtcgtctcttgggttctaagagcggactcttttcaacttatgtgttggaaattttagtcctctacatatttaatctttacaac |
107 |
Q |
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| T |
41336944 |
ttggtgttaccatgagagtcgtctcttgggttctaagagtggactcttttcaacttatgcgttggaaattttagtcctatacttatttaatctttacaac |
41337043 |
T |
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| Q |
108 |
aatgaatttgttggaccatttgaggtgacaaacttgattattttgatgtatatattaacattaatatggcttatgaagaataagaaaattaaatttatgt |
207 |
Q |
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| T |
41337044 |
aatgaatttgttggaccacttgaggtgacaaacttgattattttgatgtatatattaatattaatatggcttatgaaggataagaagataaaatttatgt |
41337143 |
T |
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| Q |
208 |
tattttgatcctattgtt |
225 |
Q |
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| T |
41337144 |
tattttgatcttattgtt |
41337161 |
T |
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