View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7582_low_14 (Length: 231)

Name: NF7582_low_14
Description: NF7582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7582_low_14
NF7582_low_14
[»] chr3 (10 HSPs)
chr3 (19-98)||(34728205-34728284)
chr3 (19-98)||(34871446-34871525)
chr3 (21-98)||(28684166-28684243)
chr3 (158-217)||(34728084-34728144)
chr3 (158-217)||(34871586-34871646)
chr3 (27-98)||(34727740-34727811)
chr3 (27-98)||(34871919-34871990)
chr3 (27-98)||(28683533-28683604)
chr3 (182-217)||(34727617-34727653)
chr3 (182-217)||(34872077-34872113)


Alignment Details
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 34728284 - 34728205
Alignment:
Q  19 cttgtcaattgtttcgcattttgataggaatctgttgatcttatatacgatgattttgcagagccgatttgtgcgattac 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34728284 cttgtcaattgtttcgcattttgataggaatctgttgatcttatatacgatgattttgcagagccgatttgtgcgattac 34728205  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 34871446 - 34871525
Alignment:
Q  19 cttgtcaattgtttcgcattttgataggaatctgttgatcttatatacgatgattttgcagagccgatttgtgcgattac 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34871446 cttgtcaattgtttcgcattttgataggaatctgttgatcttatatacgatgattttgcagagccgatttgtgcgattac 34871525  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 28684166 - 28684243
Alignment:
Q  21 tgtcaattgtttcgcattttgataggaatctgttgatcttatatacgatgattttgcagagccgatttgtgcgattac 98  Q
    ||||| ||| ||||||| |||||||||||||| ||||| ||||||| |||||| ||||||||||||||||||||||||    
T  28684166 tgtcatttgattcgcatcttgataggaatctgctgatcctatatactatgattatgcagagccgatttgtgcgattac 28684243  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 34728144 - 34728084
Alignment:
Q  158 gaagcctgtgatgataaaacatatctggaattaccgtctgaatag-tttattctttgatgt 217  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34728144 gaagcctatgatgataaaacatatctggaattaccgtctgaatagatttattctttgatgt 34728084  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 34871586 - 34871646
Alignment:
Q  158 gaagcctgtgatgataaaacatatctggaattaccgtctgaatag-tttattctttgatgt 217  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34871586 gaagcctatgatgataaaacatatctggaattaccgtctgaatagatttattctttgatgt 34871646  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 34727811 - 34727740
Alignment:
Q  27 ttgtttcgcattttgataggaatctgttgatcttatatacgatgattttgcagagccgatttgtgcgattac 98  Q
    |||||||||||| ||||||||||||| ||||||||||||  |||||  ||||||||||||||||||||||||    
T  34727811 ttgtttcgcattctgataggaatctgctgatcttatatataatgatcctgcagagccgatttgtgcgattac 34727740  T

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Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 34871919 - 34871990
Alignment:
Q  27 ttgtttcgcattttgataggaatctgttgatcttatatacgatgattttgcagagccgatttgtgcgattac 98  Q
    |||||||||||| ||||||||||||| ||||||||||||  |||||  ||||||||||||||||||||||||    
T  34871919 ttgtttcgcattctgataggaatctgctgatcttatatataatgatcctgcagagccgatttgtgcgattac 34871990  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 28683533 - 28683604
Alignment:
Q  27 ttgtttcgcattttgataggaatctgttgatcttatatacgatgattttgcagagccgatttgtgcgattac 98  Q
    |||||||||||| |||||||||||||   ||| ||||||| |||||| |||||||| |||||||||||||||    
T  28683533 ttgtttcgcattctgataggaatctgccaatcctatatactatgattatgcagagctgatttgtgcgattac 28683604  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 34727653 - 34727617
Alignment:
Q  182 ctggaattaccgtctgaatag-tttattctttgatgt 217  Q
    ||||||||||||||||||||| |||||||||||||||    
T  34727653 ctggaattaccgtctgaatagatttattctttgatgt 34727617  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 34872077 - 34872113
Alignment:
Q  182 ctggaattaccgtctgaatag-tttattctttgatgt 217  Q
    ||||||||||||||||||||| |||||||||||||||    
T  34872077 ctggaattaccgtctgaatagatttattctttgatgt 34872113  T

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