View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7582_low_2 (Length: 516)

Name: NF7582_low_2
Description: NF7582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7582_low_2
NF7582_low_2
[»] chr8 (3 HSPs)
chr8 (19-499)||(11402747-11403228)
chr8 (25-120)||(11402167-11402262)
chr8 (179-249)||(11402306-11402376)
[»] chr4 (5 HSPs)
chr4 (25-391)||(45965981-45966347)
chr4 (25-391)||(27730175-27730541)
chr4 (19-465)||(24146715-24147164)
chr4 (397-472)||(27730074-27730149)
chr4 (397-472)||(45966373-45966448)
[»] chr2 (4 HSPs)
chr2 (25-391)||(42913075-42913441)
chr2 (25-391)||(42300567-42300933)
chr2 (397-472)||(42300959-42301034)
chr2 (397-472)||(42912974-42913049)
[»] chr1 (2 HSPs)
chr1 (25-391)||(29282216-29282582)
chr1 (397-472)||(29282115-29282190)
[»] chr6 (2 HSPs)
chr6 (25-391)||(29303714-29304080)
chr6 (397-472)||(29304106-29304181)
[»] chr5 (6 HSPs)
chr5 (25-391)||(12528962-12529328)
chr5 (25-391)||(35841694-35842060)
chr5 (24-116)||(12643685-12643777)
chr5 (397-472)||(12528861-12528936)
chr5 (397-472)||(35842086-35842161)
chr5 (397-483)||(12643795-12643881)


Alignment Details
Target: chr8 (Bit Score: 458; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 19 - 499
Target Start/End: Complemental strand, 11403228 - 11402747
Alignment:
Q  19 atgacggtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgatgaagtttggtcatgtggtgactacgataatgg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11403228 atgacggtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgataaagtttggtcatgtggtgactacgataatgg 11403129  T
Q  119 agtcctccaatatcgatatcttgttattagcagagttgcaaaggatgtatcgaaagtcat-tcaacaaaatattggagaagactgaaaaagtaaaggagg 217  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11403128 agtcctccaatatcaatatcttgttattagcagagtcgcaaaggatgtatcgaaagtcatgtcaacaaaatattggagaagactgaaaaagtaaaggagg 11403029  T
Q  218 aagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11403028 aagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaa 11402929  T
Q  318 ctttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagacaataatttcaagaggaagaggtggaaacaattt 417  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402928 ctttagaggtagaggttgaggaacttttagaggaagaggacgtggaaacttcgatcaatggagagacaataatttcaagaggaagaggtggaaacaattt 11402829  T
Q  418 tggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaattacagttgttttcaccgttgaaatttt 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402828 tggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaattacagttgttttcaccgttgaaatttt 11402747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 11402167 - 11402262
Alignment:
Q  25 gtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgatgaagtttggtcatgtggtgactacgataatggag 120  Q
    |||||||||||| |||||  ||||| ||||||||||||||||| ||||   | ||||| ||||||  ||| |||||||||||||||||||||||||    
T  11402167 gtgtatggagaaaatattatggataacaaggtggtggagaaaagtctatgtaatatgttgatgaaagttgatcatgtggtgactacgataatggag 11402262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 11402306 - 11402376
Alignment:
Q  179 tcaacaaaatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataac 249  Q
    |||||| ||||||| ||||||| || |||| ||||||||||||| ||||||| || |||||| ||||||||    
T  11402306 tcaacagaatattgcagaagacagagaaagcaaaggaggaagccttgaaaagtcaagtgaacttcaataac 11402376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 25 - 391
Target Start/End: Original strand, 45965981 - 45966347
Alignment:
Q  25 gtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgatgaagtttggtcatgtggtgactacgataatggagtcct 124  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||| ||| ||| ||||||| | || ||||||||||||||||||| ||||||||     
T  45965981 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactacgatattggagtccc 45966080  T
Q  125 ccaatatcgatatcttgttattagcagagttgcaaaggatgtatcgaaagtcat-tcaacaaaatattggagaagactgaaaaagtaaaggaggaagcca 223  Q
       ||||||||| |||||   |||||||||||||  ||| | || ||||| ||| |||||  |||||||||||||||||||||||||||||||||||||     
T  45966081 atgatatcgataccttgtcggtagcagagttgcag-ggaagcattgaaagccatgtcaaccgaatattggagaagactgaaaaagtaaaggaggaagcct 45966179  T
Q  224 tgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaactttag 323  Q
    |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||    | |  |||||| |||||||||||||||||||||  ||| || ||    
T  45966180 tgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagccagaactcgtgacaatttcaacaatggaggaagaggaaatttcag 45966279  T
Q  324 aggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagacaataatt 391  Q
    ||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||| ||||    
T  45966280 aggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagacaacaatt 45966347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 25 - 391
Target Start/End: Complemental strand, 27730541 - 27730175
Alignment:
Q  25 gtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgatgaagtttggtcatgtggtgactacgataatggagtcct 124  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||| ||| ||| ||||||| | || ||||||||||||||||||| ||||||||     
T  27730541 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactacgatattggagtccc 27730442  T
Q  125 ccaatatcgatatcttgttattagcagagttgcaaaggatgtatcgaaagtcat-tcaacaaaatattggagaagactgaaaaagtaaaggaggaagcca 223  Q
       |||  |||| |||||   |||||||||||| | ||| | || ||||| ||| |||||  ||||||||| |||||||||||||||||||||||||||     
T  27730441 atgatactgataccttgtcggtagcagagttgc-agggaagcattgaaagccatgtcaaccgaatattggaaaagactgaaaaagtaaaggaggaagcct 27730343  T
Q  224 tgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaactttag 323  Q
    |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||    | || |||||| |||||||||||||||||||||  ||| || ||    
T  27730342 tgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagccagagctcgtgacaatttcaacaatggaggaagaggaaatttcag 27730243  T
Q  324 aggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagacaataatt 391  Q
    ||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||| ||||    
T  27730242 aggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagacaacaatt 27730175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 19 - 465
Target Start/End: Original strand, 24146715 - 24147164
Alignment:
Q  19 atgacggtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgatgaagtttggtcatgtggtgactacgataatgg 118  Q
    |||| ||||||||||||||||||||| ||||||||||| |||||||||||| ||| ||| ||| ||||||| | || ||||||||||||||| ||| |||    
T  24146715 atgagggtgtatggagaagatattccagatagcaaggtagtggagaaaattttacgcaccatgccgatgaaatatgatcatgtggtgactacaatattgg 24146814  T
Q  119 agtcctccaatatcgatatcttgttattagcagagttgcaaaggatgtatcgaaagtcat-tcaacaaaatattggagaagactgaaaaagtaaaggagg 217  Q
            |||| | ||| |||||   |||||||||||| | ||| | || ||||| ||| |||| | ||||||||| ||||||||||||||||||||||    
T  24146815 --------aataccaataccttgtcggtagcagagttgc-agggaagcattgaaagccatgtcaatagaatattggataagactgaaaaagtaaaggagg 24146905  T
Q  218 aagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaa 317  Q
    ||||| |||| ||||||||||| ||||| ||| ||| | |||||  ||||| ||| ||    | ||   |||| |||||||||| ||||  ||||  |||    
T  24146906 aagccttgaagagccaggtgaagctcaacaacattgtttaatccaattagatgggtgaagccagagaatgtgacaatttcaacattggattaagaggaaa 24147005  T
Q  318 ctttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagacaataatttcaa-----------gaggaagaggt 406  Q
     || |||| || |||| ||||||| ||||||||||||||| |||| |||||| | |||||||||||||| ||||||||            ||||||||||    
T  24147006 tttcagagttaaaggtcgaggaacctttagaggaagaggacgtggcaacttcaaccaatggagagacaacaatttcaatccatcccatcaaggaagaggt 24147105  T
Q  407 ggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagag 465  Q
    |||||||||||||| || | |||||||||||||| |||||||| |||||| ||||||||    
T  24147106 ggaaacaattttggctccaacaaccgtggcagaggaagaggttattacaaccaagagag 24147164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 397 - 472
Target Start/End: Complemental strand, 27730149 - 27730074
Alignment:
Q  397 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaat 472  Q
    ||||| ||||||||||||||||||||| |  ||||||||||||| |||||||| |||||| ||||||||| |||||    
T  27730149 aggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttattacaaccaagagagaacaaat 27730074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 397 - 472
Target Start/End: Original strand, 45966373 - 45966448
Alignment:
Q  397 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaat 472  Q
    ||||| |||||||||||| |||||||| |  ||||||||||||| |||||||| |||||| ||||||||| |||||    
T  45966373 aggaaaaggtggaaacaactttggttccaataaccgtggcagaggaagaggttattacaaccaagagagaacaaat 45966448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 2e-75; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 25 - 391
Target Start/End: Complemental strand, 42913441 - 42913075
Alignment:
Q  25 gtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgatgaagtttggtcatgtggtgactacgataatggagtcct 124  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||| ||| ||| ||||||| | || ||||||||||||||||||| ||||||||     
T  42913441 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactacgatattggagtccc 42913342  T
Q  125 ccaatatcgatatcttgttattagcagagttgcaaaggatgtatcgaaagtcat-tcaacaaaatattggagaagactgaaaaagtaaaggaggaagcca 223  Q
       ||| ||||| |||||   |||||||||||||  ||| | || ||||| ||| |||||  |||||||||||||||||||||||||||||||||||||     
T  42913341 atgataccgataccttgtcggtagcagagttgcag-ggaagcattgaaagccatgtcaaccgaatattggagaagactgaaaaagtaaaggaggaagcct 42913243  T
Q  224 tgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaactttag 323  Q
    |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||    | || |||||| |||||||||||||||||||||  ||| || ||    
T  42913242 tgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagccagagctcgtgacaatttcaacaatggaggaagaggaaatttcag 42913143  T
Q  324 aggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagacaataatt 391  Q
    ||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||| ||||    
T  42913142 aggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagacaacaatt 42913075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 25 - 391
Target Start/End: Original strand, 42300567 - 42300933
Alignment:
Q  25 gtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgatgaagtttggtcatgtggtgactacgataatggagtcct 124  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||  ||| ||| ||||||| | || ||||||||||||||||||| ||||||||     
T  42300567 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctatgcaccatgccgatgaaatatgatcatgtggtgactacgatattggagtccc 42300666  T
Q  125 ccaatatcgatatcttgttattagcagagttgcaaaggatgtatcgaaagtcat-tcaacaaaatattggagaagactgaaaaagtaaaggaggaagcca 223  Q
     | ||| ||||| |||||   |||||||||||| | ||| | || ||||| ||| |||||| |||||||||||||| |||||| |||||||||||||||     
T  42300667 acgataccgataccttgtcggtagcagagttgc-agggaagcattgaaagccatgtcaacagaatattggagaagagtgaaaatgtaaaggaggaagcct 42300765  T
Q  224 tgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaactttag 323  Q
    |||| ||||||||||||||||| ||| ||| ||||||| || ||| ||| ||    | || |||||| |||||||||||||||||||||  ||| || ||    
T  42300766 tgaagagccaggtgaacctcaacaacattgttgaatccagtcagatgggtgaagccagagctcgtgacaatttcaacaatggaggaagaggaaatttcag 42300865  T
Q  324 aggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagacaataatt 391  Q
    ||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||| ||||    
T  42300866 aggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagacaacaatt 42300933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 397 - 472
Target Start/End: Original strand, 42300959 - 42301034
Alignment:
Q  397 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaat 472  Q
    ||||||||||||||||||||||||||| |  | ||||||||||| |||||||| |||||| ||||||||| |||||    
T  42300959 aggaagaggtggaaacaattttggttccaatagccgtggcagaggaagaggttattacaaccaagagagaacaaat 42301034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 397 - 472
Target Start/End: Complemental strand, 42913049 - 42912974
Alignment:
Q  397 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaat 472  Q
    ||||| ||||||||||||||||||||| |  ||||||||||||| |||||||| |||||| ||||||||| |||||    
T  42913049 aggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttattacaaccaagagagaacaaat 42912974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 25 - 391
Target Start/End: Complemental strand, 29282582 - 29282216
Alignment:
Q  25 gtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgatgaagtttggtcatgtggtgactacgataatggagtcct 124  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||| ||| ||| ||||||| | || ||||||||||||||||||| ||||||||     
T  29282582 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactacgatattggagtccc 29282483  T
Q  125 ccaatatcgatatcttgttattagcagagttgcaaaggatgtatcgaaagtcat-tcaacaaaatattggagaagactgaaaaagtaaaggaggaagcca 223  Q
       ||| ||||| |||||   |||||||||||||  ||| | || ||||| ||| |||||  |||||||||||||||||||||||||||||||||||||     
T  29282482 atgataccgataccttgtcggtagcagagttgcag-ggaagcattgaaagccatgtcaaccgaatattggagaagactgaaaaagtaaaggaggaagcct 29282384  T
Q  224 tgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaactttag 323  Q
    |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||    | || |||||| |||||||||||||||||||||  ||| || ||    
T  29282383 tgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagccagagctcgtgacaatttcaacaatggaggaagaggaaatttcag 29282284  T
Q  324 aggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagacaataatt 391  Q
    ||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||| ||||    
T  29282283 aggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagacaacaatt 29282216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 397 - 472
Target Start/End: Complemental strand, 29282190 - 29282115
Alignment:
Q  397 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaat 472  Q
    ||||| ||||||||||||||||||||| |  ||||||||||||| |||||||| |||||| ||||||||| |||||    
T  29282190 aggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttattacaaccaagagagaacaaat 29282115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 25 - 391
Target Start/End: Original strand, 29303714 - 29304080
Alignment:
Q  25 gtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgatgaagtttggtcatgtggtgactacgataatggagtcct 124  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||| ||| ||| ||||||| | || ||||||||||||||||||| ||||||||     
T  29303714 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactacgatattggagtccc 29303813  T
Q  125 ccaatatcgatatcttgttattagcagagttgcaaaggatgtatcgaaagtcat-tcaacaaaatattggagaagactgaaaaagtaaaggaggaagcca 223  Q
       ||| ||||| |||||   |||||||||||||  ||| | || ||||| ||| |||||  |||||||||||||||||||||||||||||||||||||     
T  29303814 atgataccgataccttgtcggtagcagagttgcag-ggaagcattgaaagccatgtcaaccgaatattggagaagactgaaaaagtaaaggaggaagcct 29303912  T
Q  224 tgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaactttag 323  Q
    |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||   || |  |||||| |||||||||||||||||||||  ||  || ||    
T  29303913 tgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagctagaactcgtgacaatttcaacaatggaggaagaggaagtttcag 29304012  T
Q  324 aggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagacaataatt 391  Q
    ||| |||| | ||||||  ||||||||||||||| |||| |||||| | |||||||||||||| ||||    
T  29304013 aggaagagatcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagacaacaatt 29304080  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 397 - 472
Target Start/End: Original strand, 29304106 - 29304181
Alignment:
Q  397 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaat 472  Q
    ||||| ||||||||||||||||||||| |  ||||||||||||| |||||||| |||||| ||||||||| |||||    
T  29304106 aggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttattacaaccaagagagaacaaat 29304181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 1e-70; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 25 - 391
Target Start/End: Complemental strand, 12529328 - 12528962
Alignment:
Q  25 gtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgatgaagtttggtcatgtggtgactacgataatggagtcct 124  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||| ||| ||| ||||||| | || ||||||||||||||||||| ||||||||     
T  12529328 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactacgatattggagtccc 12529229  T
Q  125 ccaatatcgatatcttgttattagcagagttgcaaaggatgtatcgaaagtcat-tcaacaaaatattggagaagactgaaaaagtaaaggaggaagcca 223  Q
       ||| ||||| |||||   |||||||||||| | ||| | || ||||| ||| |||||  |||||||||||| ||||||||||||||||||||||||     
T  12529228 atgataccgataccttgtcggtagcagagttgc-agggaagcattgaaagccatgtcaaccgaatattggagaatactgaaaaagtaaaggaggaagcct 12529130  T
Q  224 tgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaactttag 323  Q
    |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||  | | |  |||||| |||||||||||||||||||||  ||  || ||    
T  12529129 tgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaaggcagaactcgtgacaatttcaacaatggaggaagaggaagtttcag 12529030  T
Q  324 aggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagacaataatt 391  Q
    ||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||| ||||    
T  12529029 aggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagacaacaatt 12528962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 25 - 391
Target Start/End: Original strand, 35841694 - 35842060
Alignment:
Q  25 gtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgatgaagtttggtcatgtggtgactacgataatggagtcct 124  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||| ||| ||| ||||||| | || |||||||||||||| |||| ||||||||     
T  35841694 gtgtatggagaagatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgactatgatattggagtccc 35841793  T
Q  125 ccaatatcgatatcttgttattagcagagttgcaaaggatgtatcgaaagtcat-tcaacaaaatattggagaagactgaaaaagtaaaggaggaagcca 223  Q
       |||  |||| |||||   |||||||||||||  ||| | || ||||| ||| |||||  |||||||||||||||||||||||||||||||||||||     
T  35841794 atgatactgataccttgtcggtagcagagttgcag-ggaagcattgaaagccatgtcaaccgaatattggagaagactgaaaaagtaaaggaggaagcct 35841892  T
Q  224 tgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaactttag 323  Q
    |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||    | || |||||| |||||||||||||||||||||  ||| || ||    
T  35841893 tgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagccagagctcgtgacaatttcaacaatggaggaagaggaaatttcag 35841992  T
Q  324 aggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagacaataatt 391  Q
    ||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||| ||||    
T  35841993 aggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagacaacaatt 35842060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 12643685 - 12643777
Alignment:
Q  24 ggtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgatgaagtttggtcatgtggtgactacgataat 116  Q
    ||||| |||| ||||||||| | ||| ||| ||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||    
T  12643685 ggtgtgtggaaaagatattctgaataacaaagtggtagagaaaattctacacactatgccgatgaagtttgatcatgtggtgactacaataat 12643777  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 397 - 472
Target Start/End: Complemental strand, 12528936 - 12528861
Alignment:
Q  397 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaat 472  Q
    ||||| ||||||||||||||||||||| |  ||||||||||||| |||||||| |||||| ||||||||| |||||    
T  12528936 aggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttattacaaccaagagagaacaaat 12528861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 397 - 472
Target Start/End: Original strand, 35842086 - 35842161
Alignment:
Q  397 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaat 472  Q
    ||||| ||||||||||||||||||||| |  ||||||||||||| |||||||| |||||| ||||||||| |||||    
T  35842086 aggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttgttacaaccaagagagaacaaat 35842161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 483
Target Start/End: Original strand, 12643795 - 12643881
Alignment:
Q  397 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaattacagttgttt 483  Q
    ||||||||||||| |||||||| ||| |||||| | || || || || ||| | |||||| ||||||||| ||||||| ||||||||    
T  12643795 aggaagaggtggagacaattttagttataccaatcatgacaaaggaaaaggatattacaaccaagagagaacaaattatagttgttt 12643881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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