View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7582_low_4 (Length: 481)
Name: NF7582_low_4
Description: NF7582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7582_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 20 - 472
Target Start/End: Complemental strand, 40325837 - 40325385
Alignment:
| Q |
20 |
tctcggccactgctttcactaatgttgttttaccagagccgcgtttcccatacaatccaattttatatgaattatcactttgtagtgcctgcaaaagtct |
119 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40325837 |
tctcagccactgctttcactaatgttgttttaccagagccgcgtttcccatacaatccaattttatatgaattatcactttgcagtgcctgcaaaagtct |
40325738 |
T |
|
| Q |
120 |
atctgaagcctctttggtagacgcgaaacagacaaaattttcagaagagaagtgttctaaacttggaataggactggaaaatggcttgaattcacatcga |
219 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40325737 |
atctgaagcctctttggtagacgcgaaacacacaaaattttcagaagagaagtgttctaaacttggaataggactggaaaatagcttgaattcacatcgg |
40325638 |
T |
|
| Q |
220 |
atattcaatgcttttagtttgtctagcattttatggcgatgtttcactgcaccatcattcgtcaattgcctatgtttttcttgtcttgacaattgaccaa |
319 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40325637 |
atattcaatgcctttaatttgtctagcattttatggcgatgtttcactgcaccatcattcgtcaattgcctatgtttttcttgtcttgacaattgcccaa |
40325538 |
T |
|
| Q |
320 |
gttcatccactactgtcatattctccacttcttgtaaaactatttctatttctcttagccactcaaacacatcatcattcaccctttcggttaaacgatc |
419 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40325537 |
gttcatccactactgtcatattccccacctcttgtaaaactatttctgtttctcttagccactcaaacacatcatcattcaccctttcggttaaacgatc |
40325438 |
T |
|
| Q |
420 |
agttgcttcaannnnnnncttaacatgatctcggtttgaaatcaccttcatct |
472 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40325437 |
agttgcttcaatttttttcttaacatgatctcggtttgaaatcaccttcatct |
40325385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 40310557 - 40310324
Alignment:
| Q |
20 |
tctcggccactgctttcactaatgttgttttaccagagccgcgtttcccatacaatccaattttatatgaattatcactttgtagtgcctgcaaaagtct |
119 |
Q |
| |
|
|||| ||||||||||| || || |||||||||||||||| || || |||||||||||||||||||| | ||| | ||| |||||||| ||||||||| |
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| T |
40310557 |
tctcagccactgctttaaccaactttgttttaccagagcctcgctttccatacaatccaattttatagaacttacgattttctagtgcctccaaaagtct |
40310458 |
T |
|
| Q |
120 |
atctgaagcctctttggtagacgcgaaacagacaaaattttcagaagagaagtgttctaaacttggaataggactggaaaatggcttgaattcacatcga |
219 |
Q |
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|||||||| |||||| ||| | | ||||| ||||||||| ||||||||||||| |||||||||||||| ||| || ||||||||| || |||||| |
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| T |
40310457 |
atctgaagtctcttttataggctcaaaacatacaaaatttccagaagagaagtgctctaaacttggaattggattgaaaaatggctcaaactcacatttg |
40310358 |
T |
|
| Q |
220 |
atattcaatgcttttagtttgtctagcattttat |
253 |
Q |
| |
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||||||||||| |||| ||||| |||||||||| |
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| T |
40310357 |
atattcaatgcctttaatttgttaagcattttat |
40310324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 205
Target Start/End: Original strand, 40257638 - 40257815
Alignment:
| Q |
28 |
actgctttcactaatgttgttttaccagagccgcgtttcccatacaatccaattttatatgaattatcactttgtagtgcctgcaaaagtctatctgaag |
127 |
Q |
| |
|
||||||||||| || |||||||||||||||| |||||||| ||||||||| |||| ||||| | ||| ||||||| ||||||| ||| |||| |
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| T |
40257638 |
actgctttcaccaactttgttttaccagagcccttcttcccatataatccaattatatagcaattaccgtcttgcagtgcctccaaaagttgatccgaag |
40257737 |
T |
|
| Q |
128 |
cctctttggtagacgcgaaacagacaaaattttcagaagagaagtgttctaaacttggaataggactggaaaatggct |
205 |
Q |
| |
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| |||| || ||| | || || ||||||||| | ||||||||| ||||||| |||||||| || |||||||||| |
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| T |
40257738 |
ctactttagtggactcaaagcatacaaaatttccgaaagagaagtactctaaaccaggaatagggctagaaaatggct |
40257815 |
T |
|
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