View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7582_low_6 (Length: 359)
Name: NF7582_low_6
Description: NF7582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7582_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 24964986 - 24964661
Alignment:
| Q |
18 |
cttatctggtagaagtaagaaatttagctgaacgttgtttttctaggggaccaatatatgctaaaattgacgttaattatgtaccaaacaaaaacaaaat |
117 |
Q |
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| T |
24964986 |
cttatctggtagaagtaagaaatttagcagaacgttgtttttctaggggaccaatatatgctaaaattgacgttaattatgtaccaaacaaaaacaaaat |
24964887 |
T |
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| Q |
118 |
taattgaccttaattacttgtatttttcccttgtttttggttcaaaaagagacaacattggagaaggaaagaatcaaaggttacgtccaccaaacgcata |
217 |
Q |
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| T |
24964886 |
taattgaccttaattacttgtatttttcccttgtttttggttcaaaaagagacaaaattggagaaggaaagaatcaaaggttacgtccaccaaacgcata |
24964787 |
T |
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| Q |
218 |
gatcagtggaagagattaaatatgaagctgaatttgaagtaccacaaagttttggagatattggtgcagttcttgtggaaaatgagcatagaagggaaat |
317 |
Q |
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| T |
24964786 |
gatcagtggaagagattaaatatgaagctgaatttgaagtaccacaaagttttggagatattggtgcagttcttgtggaaaatgagcatagaagggaaat |
24964687 |
T |
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| Q |
318 |
gtttataaagaacattgttcttgatg |
343 |
Q |
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|||||||||||||||||||||||||| |
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| T |
24964686 |
gtttataaagaacattgttcttgatg |
24964661 |
T |
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