View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7582_low_8 (Length: 300)
Name: NF7582_low_8
Description: NF7582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7582_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 11 - 286
Target Start/End: Original strand, 47267788 - 47268063
Alignment:
| Q |
11 |
ttattctgtggagttggtaagaaaattaaaagctgaagttacagaggaatatatgcattctgtagcagatcttatggttattaaggagcggtgtttattt |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47267788 |
ttatgctgtggagttggtaagaaaattaaaagctgaagttacagaggaatatatgcattctgtagcagatcttatggttattaaagagcggtgtttattt |
47267887 |
T |
|
| Q |
111 |
acaactataaggtcgtgtattgtttcagatgtaactcgtataaagttaagagaagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaa |
210 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47267888 |
acaactataaggtcttgtgttgtttcagatgtaactcgtataaagttaagagaagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaa |
47267987 |
T |
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| Q |
211 |
gtggggctgggccttttcctggagcagcctatatcatcccacatatgaatgtagaaggagaagaaggtttcatatt |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47267988 |
gtggggctgggccttttcctggagcagcctatatcatcccacataagaatgtagaaggagaagaaggtttcatatt |
47268063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 47299060 - 47298803
Alignment:
| Q |
18 |
gtggagttggtaagaaaattaaaagctgaagttacagaggaatatatgcattctgtagcagatcttatggttattaaggagcggtgtttatttacaacta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||||||| |
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| T |
47299060 |
gtggagttggtaagaaaattaaaagctgaagttacagaggaatacatgcattctgtggccgatcttatggttattaaggaacggtgtttatttacaactg |
47298961 |
T |
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| Q |
118 |
taaggtcgtgtattgtttcagatgtaactcgtataaagttaagagaagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggc |
217 |
Q |
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| T |
47298960 |
taaggtcttgtattatttcagatttgactcgtgctaggctctcagaagtgaatttcggatggggtgaaggggtgtatggtggagttgcaaaaggtggggc |
47298861 |
T |
|
| Q |
218 |
tgggccttttcctggagcagcctatatcatcccacatatgaatgtagaaggagaagaa |
275 |
Q |
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||| ||||||||||||||| |||||||| ||||| ||| |||| || ||||||||||| |
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| T |
47298860 |
tggaccttttcctggagcaacctatatcgtcccatataagaatataaaaggagaagaa |
47298803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 47292453 - 47292196
Alignment:
| Q |
18 |
gtggagttggtaagaaaattaaaagctgaagttacagaggaatatatgcattctgtagcagatcttatggttattaaggagcggtgtttatttacaacta |
117 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||||||| |
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| T |
47292453 |
gtggagttggtaagaaaattaaaagctgaagttactgaggaatacatgcattctgtggccgatcttatggttattaaggaacggtgtttatttacaactg |
47292354 |
T |
|
| Q |
118 |
taaggtcgtgtattgtttcagatgtaactcgtataaagttaagagaagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggc |
217 |
Q |
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||||||| ||| || | |||||| | |||||| | | | ||||||| ||||||| |||||||| | ||||||||||||| ||||||| ||||||| |
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| T |
47292353 |
taaggtcttgtgttatctcagatttgactcgtgctaggctctcagaagtgaattttggttggggtgaaggggtgtatggtggagttgcaaaaggtggggc |
47292254 |
T |
|
| Q |
218 |
tgggccttttcctggagcagcctatatcatcccacatatgaatgtagaaggagaagaa |
275 |
Q |
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||| | ||||||||| || |||||||| ||||| ||| |||| || | ||||||||| |
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| T |
47292253 |
tggaacatttcctggatcaacctatatcgtcccatataagaatataaatggagaagaa |
47292196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 47283760 - 47284028
Alignment:
| Q |
18 |
gtggagttggtaagaaaattaaaagctgaagttacagaggaatatatgcattctgtagcagatcttatggttattaaggagcggtgtttatttacaacta |
117 |
Q |
| |
|
||||| ||| |||||||| ||||||| |||||||||| ||||| ||||||||| | ||||||||||||||||||||||| || |||||||||||||| |
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| T |
47283760 |
gtggaattgataagaaaagcaaaagctcaagttacagaagaatacatgcattctttggcagatcttatggttattaaggaacgatgtttatttacaacag |
47283859 |
T |
|
| Q |
118 |
taaggtcgtgtattgtttcagatgtaactcgtataaagttaagagaagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggc |
217 |
Q |
| |
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|||| |||||| |||| ||||| | |||||| |||| ||||||| |||| |||||||||||||| ||||||||||||| | |||| ||||||| |
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| T |
47283860 |
taagatcgtgtgttgtatcagacttgactcgtgctaagtacgcagaagtgaatttcggatggggtgaggcggtgtatggtggagtggtaaaaggtggggc |
47283959 |
T |
|
| Q |
218 |
tgggccttttcctggagcagcctatatcatcccacatatgaatgtagaaggagaagaaggtttcatatt |
286 |
Q |
| |
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||| ||||| ||||||||| | ||||| |||||||||| ||||| |||||||||||||||||| ||||| |
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| T |
47283960 |
tggacctttacctggagcaacgtatataatcccacataagaatgcagaaggagaagaaggtttaatatt |
47284028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 47279167 - 47279435
Alignment:
| Q |
18 |
gtggagttggtaagaaaattaaaagctgaagttacagaggaatatatgcattctgtagcagatcttatggttattaaggagcggtgtttatttacaacta |
117 |
Q |
| |
|
||||| ||| |||||||| ||||||| |||||||||| ||||| ||||||||| | ||||||||||||||||||||||| || |||||||||||||| | |
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| T |
47279167 |
gtggaattgataagaaaagcaaaagctcaagttacagaagaatacatgcattctttggcagatcttatggttattaaggaacgatgtttatttacaacaa |
47279266 |
T |
|
| Q |
118 |
taaggtcgtgtattgtttcagatgtaactcgtataaagttaagagaagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggc |
217 |
Q |
| |
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|||| || ||| |||| ||||| | |||||| |||| ||||||| ||||||||||||||||||| ||||||||||| | | ||| ||| ||| |
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| T |
47279267 |
taagatcttgtgttgtatcagacttgactcgtgctaagtacgcagaagtgaattttggatggggtgaggcggtgtatggtggggtggtaaattgtgtggc |
47279366 |
T |
|
| Q |
218 |
tgggccttttcctggagcagcctatatcatcccacatatgaatgtagaaggagaagaaggtttcatatt |
286 |
Q |
| |
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|||||||| ||| ||||| | | |||||||||||||| ||||| |||||||||||||||||| ||||| |
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| T |
47279367 |
cgggcctttacctagagcaacgtttatcatcccacataagaatgcagaaggagaagaaggtttgatatt |
47279435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 47242891 - 47242989
Alignment:
| Q |
18 |
gtggagttggtaagaaaattaaaagctgaagttacagaggaatatatgcattctgtagcagatcttatggttattaaggagcggtgtttatttacaact |
116 |
Q |
| |
|
||||||||| |||||||| |||| || |||||||||||||||| ||||||||| |||||||| |||||||||||||||| || ||||||||||||||| |
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| T |
47242891 |
gtggagttgataagaaaagcaaaaactcaagttacagaggaatacatgcattctttagcagattttatggttattaaggaacgatgtttatttacaact |
47242989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 47257018 - 47257214
Alignment:
| Q |
18 |
gtggagttggtaagaaaattaaaagctgaagttacagaggaatatatgcattctgtagcagatcttatggttattaaggagcggtgtttatttacaacta |
117 |
Q |
| |
|
||||||||| |||||||| ||||||| ||||||||||| | || ||||| || | |||||| |||||||||||||||| || ||||||||||||| |
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| T |
47257018 |
gtggagttgataagaaaagcaaaagctcaagttacagagaagtacatgcactcattggcagattttatggttattaaggaacgatgtttatttacaaagg |
47257117 |
T |
|
| Q |
118 |
taaggtcgtgtattgtttcagatgtaactcgtataaagttaagagaagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtgg |
214 |
Q |
| |
|
||| | ||||| || |||||| |||||| ||||| ||||||| |||| ||||||||||| || |||||||||||||| |||||| |||| |
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| T |
47257118 |
gaagaacatgtatggtgtcagattggactcgtgctaagttctcagaagtgaatttcggatggggtgaagctgtgtatggtggagcagcaaaaggtgg |
47257214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 32731558 - 32731655
Alignment:
| Q |
18 |
gtggagttggtaagaaaattaaaagctgaagttacagaggaatatatgcattctgtagcagatcttatggttattaaggagcggtgtttatttacaac |
115 |
Q |
| |
|
||||||||| |||||||| |||| || |||||||||||||||| ||||||||| |||||||| ||||||||||||||| || |||||||||||||| |
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| T |
32731558 |
gtggagttgataagaaaagcaaaaactcaagttacagaggaatacatgcattctttagcagattgtatggttattaaggaacgatgtttatttacaac |
32731655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 236
Target Start/End: Original strand, 20519702 - 20519785
Alignment:
| Q |
153 |
aagttaagagaagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggctgggccttttcctggagca |
236 |
Q |
| |
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||||| ||||||||| ||||||||||||||||||| ||||||||||| ||||||| |||||||||| ||||| ||||||| |
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| T |
20519702 |
aagttcagagaagtgaattttggatggggtgaggcgaagtatggtggagttgcaaaagctggggctgggggttttcgtggagca |
20519785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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