View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7583_high_2 (Length: 437)
Name: NF7583_high_2
Description: NF7583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7583_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 2193336 - 2192915
Alignment:
| Q |
1 |
gatgtagaacaaccaaaagctggatatttaatatgaaaataatttgcagtcttggctnnnnnnnnn-ggtatattctagatttgatttctgattagggat |
99 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2193336 |
gatgtagcacaaccaaaagctggatatttaatatgaaaataatgtgcagtcttggctaaaaaaaaaaggtatattctagatttgatttctgattagggat |
2193237 |
T |
|
| Q |
100 |
tgaagatgcagtcatggtttcaagacaacattgataatattattattgtagatgaagtattttggtatgattgaggttattattttgcagaaacccgttg |
199 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2193236 |
tgaatatgcagtcatggtttcaagacaacattgatattattattattgtagatgaagtattttggtatgattgaggttattattttgcagaaacccgttg |
2193137 |
T |
|
| Q |
200 |
acagttatgacataggctttgaggtgcttagatttgattgaagttattatttttcagttgtaaaagtcatgaacaaaaatcaataccttaatctattttt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2193136 |
acagttatgacataggctttgaggtgcttagatttgattgaagttattatttttcagttgtaaaagtcatgaacaaaaatcaataccttaatctattttt |
2193037 |
T |
|
| Q |
300 |
atggaggatgttttctcactgattccgatggctgtgctctgtaacctcgctgcaattgaaacaagaagcgcacaaattctgctcacaagcttttgttctt |
399 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2193036 |
atggaggatgttttctcgctgattccgatggctgtgctctgtaacctcgctgcaattgaaacaagaagcgcacaaattctgctcacaaggttttgttctt |
2192937 |
T |
|
| Q |
400 |
gggttttccaatttgaggtttc |
421 |
Q |
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|||||||||||||||||||||| |
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| T |
2192936 |
gggttttccaatttgaggtttc |
2192915 |
T |
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