View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7583_high_3 (Length: 379)
Name: NF7583_high_3
Description: NF7583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7583_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 24 - 363
Target Start/End: Complemental strand, 16420499 - 16420159
Alignment:
| Q |
24 |
ttcatctttgtcatttgcatgcaatctcttggccctaatttttattttagaaataaattgttcttctctctnnnnnnng-tgacaatcaatgtcaatatg |
122 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16420499 |
ttcatctttgtcatttgcatgcaatctcttggccttaatttttgttttagaaataaattgttcttctctctaaaaaaaactgacaatcaatgtcaatatg |
16420400 |
T |
|
| Q |
123 |
tgtggtcctcgtacgaaaggctggatttaaggcaatatgcaacacgacttgatttcacatataagtgcaatggccgtgcttcttcaaaatgacgtttctt |
222 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| |
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| T |
16420399 |
tgtggtcctcgtatgaaaggctggatttaaggcaatatgcaacacgacttgatttcacatataagtgcactggtcgtgcttcttcaaaatgaagtttctt |
16420300 |
T |
|
| Q |
223 |
gagtgactacttcaaccaaaatgagaccacatgttactagtctcatgggcctatgttatgccttaacgcttgatcttgcaactacnnnnnnnnnnnnact |
322 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
16420299 |
gagtgactacttcaactaaaatgagatcacatgttactagtctcatgggcctatgttattccttaacgcttgatcttgcaactactttttcttttttact |
16420200 |
T |
|
| Q |
323 |
atcaattgagttaaaaacacaataaagaagggcatgaatat |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16420199 |
atcaattgagttaaaaacacaataaagaagggcatgaatat |
16420159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 115 - 303
Target Start/End: Original strand, 16476693 - 16476882
Alignment:
| Q |
115 |
tcaatatgtgtggtcctcgtacgaaaggctggatttaaggcaatatgcaacacgacttgatt-tcacatataagtg-caatggccgtgcttcttcaaaat |
212 |
Q |
| |
|
||||||||| |||||||||| ||| |||||||| ||||||||||||||||||||||||| ||||||||||||| || ||| ||||||||||| || |
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|
| T |
16476693 |
tcaatatgtctggtcctcgtttgaatcactggattttaggcaatatgcaacacgacttgattatcacatataagtgtcattggtcgtgcttcttcgaatc |
16476792 |
T |
|
| Q |
213 |
gacgtttcttgagtgactacttcaaccaaaatgagaccacatgttactagtctcatgggcctatgttatgccttaacgcttgatcttgcaa |
303 |
Q |
| |
|
|| ||| ||||||| |||||||||||| ||||||| ||||||||||||| ||||| ||||| |||||| | | ||||||||||||||| |
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|
| T |
16476793 |
gaagttccttgagtaactacttcaacc-aaatgagttcacatgttactagggacatggccctatattatgcttcagcgcttgatcttgcaa |
16476882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 115 - 303
Target Start/End: Original strand, 45433782 - 45433971
Alignment:
| Q |
115 |
tcaatatgtgtggtcctcgtacgaaaggctggatttaaggcaatatgcaacacgacttgatt-tcacatataagtg-caatggccgtgcttcttcaaaat |
212 |
Q |
| |
|
||||||||| |||||||| | ||||| |||||||| ||||||||||||||||| ||||||| ||||||||||||| || ||| |||||||||||||| | |
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|
| T |
45433782 |
tcaatatgtttggtcctctcatgaaagactggatttgaggcaatatgcaacacggcttgattgtcacatataagtgtcattggtcgtgcttcttcaaatt |
45433881 |
T |
|
| Q |
213 |
gacgtttcttgagtgactacttcaaccaaaatgagaccacatgttactagtctcatgggcctatgttatgccttaacgcttgatcttgcaa |
303 |
Q |
| |
|
|| ||| |||||| | | |||||||| ||||||| |||||||||||||| ||| | ||||| || ||||| ||||||||||||||||| |
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|
| T |
45433882 |
gaagttctttgagtaattgcttcaacc-aaatgagttcacatgttactagtgccatagccctatattctgcctcaacgcttgatcttgcaa |
45433971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 299
Target Start/End: Original strand, 29806354 - 29806455
Alignment:
| Q |
197 |
cgtgcttcttcaaaatgacgtttcttgagtgactacttcaaccaaaatgagaccacatgttactagtctcatgggcctatgttatgccttaacgcttgat |
296 |
Q |
| |
|
|||||||||||||| ||| ||| ||||||| ||| |||||| || ||||| |||||||||||||| | |||| ||||| || ||||| |||||||||| |
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|
| T |
29806354 |
cgtgcttcttcaaattgaagttccttgagtaactggttcaac-aacatgagttcacatgttactagtgttatggccctatattctgcctcaacgcttgat |
29806452 |
T |
|
| Q |
297 |
ctt |
299 |
Q |
| |
|
||| |
|
|
| T |
29806453 |
ctt |
29806455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 307
Target Start/End: Original strand, 41488718 - 41488883
Alignment:
| Q |
143 |
ctggatttaaggcaatatgcaacacgacttgatt-tcacatataagtg-caatggccgtgcttcttcaaaatgacgtttcttgagtgactacttcaacca |
240 |
Q |
| |
|
|||||||| |||| ||||||||| | ||||||| ||||||||||| | || ||| ||||||||||| || ||| ||| ||| ||| || ||||||||| |
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|
| T |
41488718 |
ctggatttgaggcgatatgcaacgcagcttgattatcacatataagcgtcattggtcgtgcttcttcgaattgaagttccttaagtagctgcttcaacca |
41488817 |
T |
|
| Q |
241 |
aaatgagaccacatgttactagtctcatgggcctatgttatgccttaacgcttgatcttgcaactac |
307 |
Q |
| |
|
|| |||| |||||||||||||| ||||| | | | || ||||| | | ||||||||||||||||| |
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|
| T |
41488818 |
aa-tgagttcacatgttactagtaccatggccttgtattctgcctcagcacttgatcttgcaactac |
41488883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 115 - 307
Target Start/End: Original strand, 14156700 - 14156893
Alignment:
| Q |
115 |
tcaatatgtgtggtcctcgtacgaaaggctggatttaaggcaatatgcaacacgacttgatt-tcacatataagtg-caatggccgtgcttcttcaaaat |
212 |
Q |
| |
|
||||||||| |||||||| | ||||| ||| |||| |||||||||||||| || ||||||| ||||||||||| | || ||| ||| |||||||||| | |
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|
| T |
14156700 |
tcaatatgtttggtcctctcatgaaagactgaatttgaggcaatatgcaacgcggcttgattgtcacatataagagtcattggtcgtacttcttcaaatt |
14156799 |
T |
|
| Q |
213 |
gacgtttcttgagtgactacttcaaccaaaatgagaccacatgttactagtctcatgggcctatgttatgccttaacgcttgatcttgcaactac |
307 |
Q |
| |
|
|| ||| |||||| ||| ||||||||||| |||| |||||||||||||| ||| | ||||| || ||||| | ||||||||||||||||||| |
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|
| T |
14156800 |
gaagttctttgagtaactgcttcaaccaaa-tgagttcacatgttactagtgccatagccctatattctgcctcagcgcttgatcttgcaactac |
14156893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 307
Target Start/End: Complemental strand, 19127118 - 19126953
Alignment:
| Q |
143 |
ctggatttaaggcaatatgcaacacgacttgattt-cacatataagtg-caatggccgtgcttcttcaaaatgacgtttcttgagtgactacttcaacca |
240 |
Q |
| |
|
|||||||| |||| |||||||||| ||||| |||| |||||||||| | || ||||| ||||||||| || ||| ||| |||||| | | ||||||||| |
|
|
| T |
19127118 |
ctggatttgaggcgatatgcaacatgactttattttcacatataagcgtcattggccatgcttcttcgaattgaagttctttgagtaaatgcttcaacca |
19127019 |
T |
|
| Q |
241 |
aaatgagaccacatgttactagtctcatgggcctatgttatgccttaacgcttgatcttgcaactac |
307 |
Q |
| |
|
|| |||| |||||||||||||| ||||| ||||| || ||| | || |||||||||||||||||| |
|
|
| T |
19127018 |
aa-tgagttcacatgttactagtgtcatgaccctatattctgcatcaaagcttgatcttgcaactac |
19126953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 306
Target Start/End: Original strand, 8280608 - 8280716
Alignment:
| Q |
197 |
cgtgcttcttcaaaatgacgtttcttgagtgactacttcaaccaaaatgagaccacatgttactagtctcatgggcctatgttatgccttaacgcttgat |
296 |
Q |
| |
|
|||||||||||||| ||| ||| || |||| | | ||||||||||| |||| |||| |||| |||| |||| ||||| || ||||| |||||||||| |
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|
| T |
8280608 |
cgtgcttcttcaaattgaagttcctcgagtaaatgcttcaaccaaa-tgagctcacaagttattagtgccatgaccctatattctgcctcaacgcttgat |
8280706 |
T |
|
| Q |
297 |
cttgcaacta |
306 |
Q |
| |
|
|||||||||| |
|
|
| T |
8280707 |
cttgcaacta |
8280716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 199 - 307
Target Start/End: Complemental strand, 23520337 - 23520230
Alignment:
| Q |
199 |
tgcttcttcaaaatgacgtttcttgagtgactacttcaaccaaaatgagaccacatgttactagtctcatgggcctatgttatgccttaacgcttgatct |
298 |
Q |
| |
|
||||||||| || ||| ||| ||||||| ||| ||||||||||| |||| |||||||||||||| ||||| ||||| || |||| |||||||||||| |
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|
| T |
23520337 |
tgcttcttcgaattgaagttccttgagtaactgcttcaaccaaa-tgagttcacatgttactagtgtcatgaccctatattcggcctcaacgcttgatct |
23520239 |
T |
|
| Q |
299 |
tgcaactac |
307 |
Q |
| |
|
||||||||| |
|
|
| T |
23520238 |
tgcaactac |
23520230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 307
Target Start/End: Complemental strand, 55256111 - 55255981
Alignment:
| Q |
177 |
tcacatataagtg-caatggccgtgcttcttcaaaatgacgtttcttgagtgactacttcaaccaaaatgagaccacatgttactagtctcatgggccta |
275 |
Q |
| |
|
||||||||||| | || ||| ||||||||||| || ||| ||| ||| ||| || ||||||||||| |||| |||||||||||||| ||||| |||| |
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|
| T |
55256111 |
tcacatataagcgtcattggtcgtgcttcttcgaattgaagttccttaagtagctgcttcaaccaaa-tgagttcacatgttactagtgccatggcccta |
55256013 |
T |
|
| Q |
276 |
tgttatgccttaacgcttgatcttgcaactac |
307 |
Q |
| |
|
| || ||||| | ||||||||||||||||||| |
|
|
| T |
55256012 |
tattctgcctcagcgcttgatcttgcaactac |
55255981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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