View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7583_low_5 (Length: 369)
Name: NF7583_low_5
Description: NF7583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7583_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 5 - 352
Target Start/End: Original strand, 24262584 - 24262933
Alignment:
| Q |
5 |
agtttggagtttaggacttacattgatgcctcagatgtctggcttttggcaactgcgatcaagggggtagacctcgcaaactagtagatgatatagaagt |
104 |
Q |
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| T |
24262584 |
agtttggagtttagaacttacattgatgcctcggatgtctggcttttggcaactgcaatcaatggggtagacctcccaaactggtagataatatagaagt |
24262683 |
T |
|
| Q |
105 |
aatgagcatggagactaatgaaatgtaaagaagctgtcaagctacatgaaaaaaggcattgccgaacaaaactt--ttacctcagagcttttaaagctat |
202 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||||||| |||| ||||| | ||||||| | |||||||||||||||||||||||| |
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| T |
24262684 |
aatgagcatggagaccaatgaaatgtaaagaagctatcaagctacatagaaaagaacattgacaaacaaaaaatctttacctcagagcttttaaagctat |
24262783 |
T |
|
| Q |
203 |
ttatagatgtcaaagaagtcctttgtttagagttttcattgtttatttttgcctcctttgagtttgtcaactttcttgaattaagagttgaagtcacagc |
302 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24262784 |
ttatagatgtcaaagaagtcctttgtttagagtttccattgtttgtttttgcctcctttgagtttgtcaactttcttgaattaagagttgaagtcacagc |
24262883 |
T |
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| Q |
303 |
ttgaacatgcttattttctgtcttcttaagaatcccatcggtgcttttct |
352 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24262884 |
ttgaatgtgcttattttctgtcttcttaagaatcccatcggtgcttttct |
24262933 |
T |
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