View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7583_low_6 (Length: 296)
Name: NF7583_low_6
Description: NF7583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7583_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 3649636 - 3649906
Alignment:
| Q |
19 |
tattatgatggctataaattaaacatggtctcaaattgtagtcaacatcata----gttgtgcccacaatat--tgttgttgtggtagcctccacaaaaa |
112 |
Q |
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| T |
3649636 |
tattatgatggctataaattaaacatggtctcaaattgtagtcaacatcatatatagttgtggccacaatatattgttgttgtggtagcctccacaaaaa |
3649735 |
T |
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| Q |
113 |
tattgtactacaatagttgtgtgattttcaatcacgtctacgatcgcatcgcaatcatacaagaaaccacatcagttcctacgatgtccattcaaatatt |
212 |
Q |
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| T |
3649736 |
tattgtaccacaatagttgtgtgattttcaatcacgtctacgatcgcatcgcaatcatacaagaaaccgcatcagttcctacgatgtccattcaaatatt |
3649835 |
T |
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| Q |
213 |
ctcaccaaaaattaaaactttagaaccacaaatacgaatcttctttagatataatgaccaatcttaccttc |
283 |
Q |
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| T |
3649836 |
ctcaccaaaaattaaaactttagaaccacaaatacgaatcttctttagatataatgaacaatcttaccttc |
3649906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 38750928 - 38750844
Alignment:
| Q |
79 |
cacaatattgttgttgtggtagcctccacaaaaatattgtactacaatagttgtgtgattttcaatcacgtctacgatcgcatcg |
163 |
Q |
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| T |
38750928 |
cacaatattgttgttgtgttagactccacaatgacattgcaccacaatagcattgtgatcttcaatcacgtgtatggtcgcatcg |
38750844 |
T |
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