View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7584_high_1 (Length: 547)
Name: NF7584_high_1
Description: NF7584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7584_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 16 - 533
Target Start/End: Original strand, 36935830 - 36936354
Alignment:
| Q |
16 |
atggcaatcagtattaatttatggataatgccagttttagacatgatgtataataatgttatttactagtttgtttaatttctgcgtttctcgatgcata |
115 |
Q |
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| T |
36935830 |
atggcaatcaatattaatttatggataatgccagttttagacatgatgtataataatgttatttactagtttgtttaatttctgcgtttctcgatgcata |
36935929 |
T |
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| Q |
116 |
accattttatgatgttttttgggcacaaatataccacatcccttcctatgtataaatcatggcgaagttattcataaatatagacaactcctattcatgg |
215 |
Q |
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| T |
36935930 |
accattttatgatgttttttgggcacaaatataccacatcccttcctatgtataaatcatggcgaagttattcataaatatagactactcctattcatgg |
36936029 |
T |
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| Q |
216 |
tgtttaatcttgc--------tcggttatgaattattttctttggtttttgtatgctcagattgactacaggaagtctcgaaagtgaccattagatggtt |
307 |
Q |
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| T |
36936030 |
tgtttaatcttgcattcttgctcggttatgaattattt-ctttggtttttgtatgctcagattgactacaggtagtctcgaaagtgaccattagatggtt |
36936128 |
T |
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| Q |
308 |
gtagaagagatcgaggctggagacatctcacattagcaatgtcctcaggatgcaattccaaaaggtcaaacacatttagggtttttcgacaaattgaatg |
407 |
Q |
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| T |
36936129 |
ttagaagagatcgaggttggagacatctcacattagcaatgtcctcaggatgcaattccaaaaggtcaaacatatttagggtttttcgacaaattgaaca |
36936228 |
T |
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| Q |
408 |
caataacaacaaactcgacatagtctaaactaaagaccaccaaaagagaaataaaacagataaaatagtaaagtgtcgggttgaaacatgataggacatt |
507 |
Q |
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| T |
36936229 |
caataacaacaaactcgacatagtctaaactaaagaccaccaaaagagaaataaaacagataaaatagtaaagtgtcaggttgaaacatgataggacatt |
36936328 |
T |
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| Q |
508 |
tctacccggatttagactggagaagt |
533 |
Q |
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| T |
36936329 |
tctacccggatttagactggagaagt |
36936354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 377
Target Start/End: Original strand, 36956993 - 36957044
Alignment:
| Q |
325 |
tggagacatctcacattagcaatgtcctcaggatgcaattccaaaaggtcaaa |
377 |
Q |
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| T |
36956993 |
tggagacatctcgcattagcaatatcctcagg-tgcaatttcagaaggtcaaa |
36957044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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