View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7584_high_10 (Length: 339)
Name: NF7584_high_10
Description: NF7584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7584_high_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 2536478 - 2536140
Alignment:
| Q |
1 |
caagacaacacaatttgtatataagtatgttcagcaaaagaatatacacaatatttctaaaccatgataatttcatatagtcatcaatcgaatggcacaa |
100 |
Q |
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| T |
2536478 |
caagacaacacaatttgtatataagtatgttcagcaaaagaatatacacaatatttctaaaccatgataatttcatatagtcatcaatcgaatggcacaa |
2536379 |
T |
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| Q |
101 |
ctgttaatcaaatgaccataacacagcctcaaaaatactacaaatataaacagagaacaaatccaaaacatgtaccaaactaaccacaaaactttacctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2536378 |
ctgttaatcaaatgaccataacacagcctcaaaattactacaaatataaacagagaacaaatccaaaacatgtaccaaactaaccacaaaactttacctc |
2536279 |
T |
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| Q |
201 |
agagaatactgatgacttgatttctctgagacatctttttggagtcttcactcttcaccggtcagtttcgcatcttcctctgcctggttttcgtcatcag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2536278 |
agagaatactgatgacttgatttctctgagacatctttttgaagtcttcactcttcaccggtcagtttcgcgtcttcctctgcctggttttcgtcatcag |
2536179 |
T |
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| Q |
301 |
aaaccaccaccagcgattgcagtcattctcttcttagca |
339 |
Q |
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|| ||||||||||| || || || ||||||||||||||| |
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| T |
2536178 |
aacccaccaccagcaatggccgtaattctcttcttagca |
2536140 |
T |
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