View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7584_high_15 (Length: 246)
Name: NF7584_high_15
Description: NF7584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7584_high_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 12312074 - 12311836
Alignment:
| Q |
1 |
accaccatcatgaaccaaaagtgattccaatgagttacaatgttgtgcaaggttcaacaaaactccatcaaccacgcttctacaagtcttgagctcaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12312074 |
accaccatcatgaaccaaaagtgattccaatgagttacaatgttgtgcaaggttcaacaaaactccatcaaccacgcttctacaagtcttgagctcaatt |
12311975 |
T |
|
| Q |
101 |
tgttgaataccctgcaaacattgaacaaaagaagagtaagaaccaccaattccttgacaacttagaagcttcaatttcttaaggtttctgcatctcttcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12311974 |
tgttgaataccctgcaaacattgaacaaaacaagagtaagaaccaccaattccttgacaactaagaagcttcaatttcttaaggtttctgcatctcttcc |
12311875 |
T |
|
| Q |
201 |
atagccaaccaattccccaatcatctccgcgaatattct |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12311874 |
atagccaaccaattccccaatcatctccgcgaatattct |
12311836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 18668034 - 18668092
Alignment:
| Q |
112 |
ctgcaaacattgaacaaaagaagagtaagaaccaccaattccttgacaacttagaagct |
170 |
Q |
| |
|
|||||||| |||| ||| ||| | |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
18668034 |
ctgcaaacgttgagcaagagatgggtaagaaccaccaattccttaacaacatagaagct |
18668092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 66 - 201
Target Start/End: Original strand, 12235190 - 12235325
Alignment:
| Q |
66 |
catcaaccacgcttctacaagtcttgagctcaatttgttgaataccctgcaaacattgaacaaaagaagagtaagaaccaccaattccttgacaacttag |
165 |
Q |
| |
|
|||||||||| || ||| ||| ||||| | ||||||||||| ||| |||||||||||||||||| |||||||||||||||||||| ||| |||||||| |
|
|
| T |
12235190 |
catcaaccacactcctataagatttgagttgaatttgttgaaaaccttgcaaacattgaacaaaacaagagtaagaaccaccaatttattggcaacttag |
12235289 |
T |
|
| Q |
166 |
aagcttcaatttcttaaggtttctgcatctcttcca |
201 |
Q |
| |
|
|| ||||||||||||| |||| ||||||||||||| |
|
|
| T |
12235290 |
aaacttcaatttcttattgtttttgcatctcttcca |
12235325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 33392845 - 33392899
Alignment:
| Q |
162 |
ttagaagcttcaatttcttaaggtttctgcatctcttccatagccaaccaattcc |
216 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| | |||||||||||||||||||| |
|
|
| T |
33392845 |
ttagaagcttcaatttcttatggtttttgcatatattccatagccaaccaattcc |
33392899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 26110547 - 26110480
Alignment:
| Q |
161 |
cttagaagcttcaatttcttaaggtttctgcatctcttccatagccaaccaattccccaatcatctcc |
228 |
Q |
| |
|
|||| |||| |||||||| |||| ||| || |||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
26110547 |
cttataagcctcaatttcataagatttttgtatctcttccatatccaaccaattccacaatcatctcc |
26110480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University