View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7584_high_3 (Length: 468)
Name: NF7584_high_3
Description: NF7584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7584_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 7e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 266 - 452
Target Start/End: Complemental strand, 540466 - 540280
Alignment:
| Q |
266 |
aaggtccagctgtggtccttctaatatgacctgttatagccactagtagatgcagttccatgttcttctctctccttcgtctcttccttccaccaccaca |
365 |
Q |
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| T |
540466 |
aaggtccagctgtggtccttctaatatgacctgttatagctagtagtagatgcagttccatgttcttctctctccttcgtctcttccttccaccaccaca |
540367 |
T |
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| Q |
366 |
ccaagtccttttcttaatcggatcagaccaagttctttaacttcttaaaaaacacatgattaagattctactgtgtgaggtgcttaa |
452 |
Q |
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| T |
540366 |
ccaagtccttttcttaaacggatcagatcaagttctttaacttcttaaaaaacacatgactaagattctagtgtgtgaggtgcttaa |
540280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 13 - 155
Target Start/End: Complemental strand, 540713 - 540571
Alignment:
| Q |
13 |
atggacatcatagagggagtagtgcacgtgataaacacaattaatatttatatagtatttcaaattgttttatcacatgatcataatgagtaaaacaaaa |
112 |
Q |
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| T |
540713 |
atggaaatcatagtgggagtagtgcacgtgataaacacaattaatatttatatagtatttcaaattgttttatcacatgatcataatgagtaaaacaaaa |
540614 |
T |
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| Q |
113 |
aattgatcatagctaccaaattgtcggacaatggaaaccccca |
155 |
Q |
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| T |
540613 |
aattaatcatagctaccaaattgtcggacaatggaaaccccca |
540571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 266 - 452
Target Start/End: Complemental strand, 30562390 - 30562204
Alignment:
| Q |
266 |
aaggtccagctgtggtccttctaatatgacctgttatagccactagtagatgcagttccatgttcttctctctccttcgtctcttccttccaccaccaca |
365 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
30562390 |
aaggtccaactgtggtccttctaatatgacctgatatagcccgtggtagatgcagttccatgttcttctctctgcttcgtctcttccttccaccgccaca |
30562291 |
T |
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| Q |
366 |
ccaagtccttttcttaatcggatcagaccaagttctttaacttcttaaaaaacacatgattaagattctactgtgtgaggtgcttaa |
452 |
Q |
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| T |
30562290 |
ccaagtccttttcttaaacggatcagaccaagttctttaacttcttaaaaaacacatgactaagattctactgtgtgaggtgcttaa |
30562204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 266 - 452
Target Start/End: Complemental strand, 54902183 - 54901997
Alignment:
| Q |
266 |
aaggtccagctgtggtccttctaatatgacctgttatagccactagtagatgcagttccatgttcttctctctccttcgtctcttccttccaccaccaca |
365 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
54902183 |
aaggtccaactgtggtccttctaatatgacctgatatagcccgtggtagatgcagttccatgttcttctctctgcttcgtctcttccttccaccgccaca |
54902084 |
T |
|
| Q |
366 |
ccaagtccttttcttaatcggatcagaccaagttctttaacttcttaaaaaacacatgattaagattctactgtgtgaggtgcttaa |
452 |
Q |
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| T |
54902083 |
ccaagtccttttcttaaacggatcagaccaagttctttaacttcttaaaaaacacatgactaagattctactgtgtgaggtgcttaa |
54901997 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 278 - 452
Target Start/End: Complemental strand, 9333540 - 9333366
Alignment:
| Q |
278 |
tggtccttctaatatgacctgttatagccactagtagatgcagttccatgttcttctctctccttcgtctcttccttccaccaccacaccaagtcctttt |
377 |
Q |
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||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
9333540 |
tggtccttctaatatgacctgatatagcccgtggtagatgcagttccatgttcttctctctgcttcgtctcttccttccaccgccacaccaagtcctttt |
9333441 |
T |
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| Q |
378 |
cttaatcggatcagaccaagttctttaacttcttaaaaaacacatgattaagattctactgtgtgaggtgcttaa |
452 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9333440 |
cttaaacggatcagaccaagttctttaacttcttaaaaaacacatgactaagattctactgtgtgaggtgcttaa |
9333366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 266 - 351
Target Start/End: Complemental strand, 28824022 - 28823937
Alignment:
| Q |
266 |
aaggtccagctgtggtccttctaatatgacctgttatagccactagtagatgcagttccatgttcttctctctccttcgtctcttc |
351 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||| |
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| T |
28824022 |
aaggtccaactgtggtccttctaatatgacctgttatagcccgtggtagatgcagttccatgttcttctctctgcttcgtctcttc |
28823937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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