View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7584_low_15 (Length: 302)
Name: NF7584_low_15
Description: NF7584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7584_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 42732451 - 42732735
Alignment:
| Q |
1 |
agggctgagacccaatagaacagtccattaggccccaattactcctgagaaagagcctcttcgttgtcacttgtataacctattactataagctctgact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42732451 |
agggctgagacccaatagaacagtccattaggccccaattactcctgagaaagagcctcttcgttgtcacttgtataatctattactataagctctgact |
42732550 |
T |
|
| Q |
101 |
cattgtccttctctatagggaatgcttatattgttgcattgcatgcgttattatggtctgattactacatgacatcaataaataatcaatatttatggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42732551 |
cattgtccttctctatagggaatgcttatattattgcattgcatgcgttattatggtctgattactacatgacatcaataaataatcaatatttatggaa |
42732650 |
T |
|
| Q |
201 |
catagttgtatatagtatatacaacaacaagccttccacaacgagagagaaagtgacttgtgaaggttgattattggtttccttt |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42732651 |
catagttgtatatagtatatacaacaacaagccttccacaacgagagagaaagtgacttgtgaaggttgattattggtttccttt |
42732735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University