View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7584_low_16 (Length: 298)
Name: NF7584_low_16
Description: NF7584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7584_low_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 133 - 281
Target Start/End: Complemental strand, 8298261 - 8298113
Alignment:
| Q |
133 |
tatattctattccaccgcacttaccatcagtttgttgagagttcattcaatttttagtcaaaataacttaattacttttgacacaagtaatgtaataata |
232 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8298261 |
tatattctattgcactgcacttaccatcagtttgttgagaattcattcaaattttagtcaaaataacttaattacttttgacacaagtaatgtaataata |
8298162 |
T |
|
| Q |
233 |
gagtttgtaagattatttgatgcgcaagtaacatagtgatagagcttca |
281 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8298161 |
gagtttgtaagattatttgatgcgcaattaacatagtgatagagcttca |
8298113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 281
Target Start/End: Original strand, 18938246 - 18938341
Alignment:
| Q |
186 |
ttagtcaaaataacttaattacttttgacacaagtaatgtaataatagagtttgtaagattatttgatgcgcaagtaacatagtgatagagcttca |
281 |
Q |
| |
|
||||||||||||| | ||||||| ||| | ||||||||| | |||||||||||| |||||| ||| ||||||||||||||||||||||| ||||| |
|
|
| T |
18938246 |
ttagtcaaaataatgtgattacttgtgatataagtaatgttaaaatagagtttgtgagattacttgttgcgcaagtaacatagtgatagaacttca |
18938341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 281
Target Start/End: Original strand, 3013767 - 3013869
Alignment:
| Q |
185 |
tttagtcaaaataacttaattacttttgacacaagtaatgtaataatagagtttgtaagattatttga------tgcgcaagtaacatagtgatagagct |
278 |
Q |
| |
|
|||||||||||||| | ||| ||| ||| |||||||||||||||||| ||||| |||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
3013767 |
tttagtcaaaataatgtgatttcttgtgatacaagtaatgtaataataatgtttgagagattacttgcacatgctgcgcaagtaacatagtgatagagct |
3013866 |
T |
|
| Q |
279 |
tca |
281 |
Q |
| |
|
||| |
|
|
| T |
3013867 |
tca |
3013869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University