View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7584_low_18 (Length: 258)
Name: NF7584_low_18
Description: NF7584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7584_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 23 - 252
Target Start/End: Complemental strand, 12312302 - 12312073
Alignment:
| Q |
23 |
tgccaattcttcaagaccattactcattgctacacttagaaccttaagcccttcaccagttacaagacaacaactttgaagcctaatactcgaaaggcct |
122 |
Q |
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| T |
12312302 |
tgccaattcttcaagaccattactcaatgctacacttagaaccttaagcccttcaccagttacaagacaacaactttgaagcctaatactcgaaaggcct |
12312203 |
T |
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| Q |
123 |
cgaaaatttgtagtcatagcaatagcaaatagatgattgttttcaaggtccataggtaaacgaaaatcgagtttatgcaaattattagaactacaatttg |
222 |
Q |
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| T |
12312202 |
cgaaaatttgtagtcatagcaatagcaaatagatgattgttttcaaggtccataggtaaacgaaaatcgagtttatgcaaattattagaactacaatttg |
12312103 |
T |
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| Q |
223 |
aaaagaaatgtagcaaaccctctctgctac |
252 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
12312102 |
aaaagaaatgtagcaaaccctctctgctac |
12312073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 12235096 - 12235173
Alignment:
| Q |
136 |
tcatagcaatagcaaatagatgattgttttcaaggtccataggtaaacgaaaatcgagtttatgcaaattattagaact |
214 |
Q |
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| T |
12235096 |
tcatagccatataaaatagatgatggtattcaaggtccatggataatcgaaaatcaagtttatgc-aattattagaact |
12235173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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